Hb_006026_040

Information

Type -
Description -
Location Contig6026: 56661-58647
Sequence    

Annotation

kegg
ID tcc:TCM_002933
description Ribosomal protein L13 family protein
nr
ID XP_012085110.1
description PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
swissprot
ID Q9FKC0
description 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1
trembl
ID A0A067JUB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17546 PE=3 SV=1
Gene Ontology
ID GO:0030529
description 60s ribosomal protein l13a-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006026_040 0.0 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
2 Hb_000424_240 0.1198903504 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
3 Hb_000077_130 0.1199718569 - - PREDICTED: callose synthase 12 [Jatropha curcas]
4 Hb_036034_010 0.1337435218 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000248_050 0.1372536352 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
6 Hb_022288_010 0.139786232 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
7 Hb_000307_200 0.1423359936 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
8 Hb_012055_020 0.1431475845 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
9 Hb_006455_080 0.1460599353 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
10 Hb_051407_010 0.146890189 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
11 Hb_005288_120 0.1497041621 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
12 Hb_000926_120 0.1499604603 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
13 Hb_025814_010 0.1507058261 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
14 Hb_022288_020 0.1526719149 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
15 Hb_109168_010 0.1543438433 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_063716_010 0.1548183944 - - phopholipase d alpha, putative [Ricinus communis]
17 Hb_008528_010 0.1562390297 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
18 Hb_000208_290 0.1563734302 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
19 Hb_077219_010 0.1569068274 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000453_080 0.1570145055 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006026_040 Hb_006026_040 Hb_000424_240 Hb_000424_240 Hb_006026_040--Hb_000424_240 Hb_000077_130 Hb_000077_130 Hb_006026_040--Hb_000077_130 Hb_036034_010 Hb_036034_010 Hb_006026_040--Hb_036034_010 Hb_000248_050 Hb_000248_050 Hb_006026_040--Hb_000248_050 Hb_022288_010 Hb_022288_010 Hb_006026_040--Hb_022288_010 Hb_000307_200 Hb_000307_200 Hb_006026_040--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_000424_240--Hb_012286_050 Hb_001102_150 Hb_001102_150 Hb_000424_240--Hb_001102_150 Hb_000424_240--Hb_000307_200 Hb_000696_350 Hb_000696_350 Hb_000424_240--Hb_000696_350 Hb_025814_010 Hb_025814_010 Hb_000424_240--Hb_025814_010 Hb_000497_140 Hb_000497_140 Hb_000077_130--Hb_000497_140 Hb_001584_110 Hb_001584_110 Hb_000077_130--Hb_001584_110 Hb_012055_020 Hb_012055_020 Hb_000077_130--Hb_012055_020 Hb_000236_250 Hb_000236_250 Hb_000077_130--Hb_000236_250 Hb_002874_070 Hb_002874_070 Hb_000077_130--Hb_002874_070 Hb_006091_030 Hb_006091_030 Hb_000077_130--Hb_006091_030 Hb_020902_010 Hb_020902_010 Hb_036034_010--Hb_020902_010 Hb_000077_050 Hb_000077_050 Hb_036034_010--Hb_000077_050 Hb_036034_010--Hb_000307_200 Hb_036034_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_036034_010--Hb_014568_030 Hb_041091_010 Hb_041091_010 Hb_036034_010--Hb_041091_010 Hb_000152_740 Hb_000152_740 Hb_000248_050--Hb_000152_740 Hb_118301_010 Hb_118301_010 Hb_000248_050--Hb_118301_010 Hb_006455_080 Hb_006455_080 Hb_000248_050--Hb_006455_080 Hb_002918_070 Hb_002918_070 Hb_000248_050--Hb_002918_070 Hb_004881_050 Hb_004881_050 Hb_000248_050--Hb_004881_050 Hb_005000_270 Hb_005000_270 Hb_000248_050--Hb_005000_270 Hb_008528_010 Hb_008528_010 Hb_022288_010--Hb_008528_010 Hb_000016_110 Hb_000016_110 Hb_022288_010--Hb_000016_110 Hb_000805_310 Hb_000805_310 Hb_022288_010--Hb_000805_310 Hb_174865_050 Hb_174865_050 Hb_022288_010--Hb_174865_050 Hb_011496_010 Hb_011496_010 Hb_022288_010--Hb_011496_010 Hb_000208_290 Hb_000208_290 Hb_022288_010--Hb_000208_290 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77809 0.178853 0.237133 0.593244 3.24623 4.72337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09635 0.354982 1.74828 0.963612 0.408555

CAGE analysis