Hb_000208_290

Information

Type transcription factor
Description TF Family: NAC
Location Contig208: 373888-383232
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23630g
description POPTRDRAFT_725098; no apical meristem family protein
nr
ID XP_012081001.1
description PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9FFI5
description NAC domain-containing protein 86 OS=Arabidopsis thaliana GN=NAC086 PE=2 SV=1
trembl
ID R4NFV5
description NAC transcription factor 043 OS=Jatropha curcas GN=JCGZ_16181 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 78

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21507: 373985-383019
cDNA
(Sanger)
(ID:Location)		 003_N23.ab1: 374198-382075

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_290 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
2 Hb_004156_060 0.0802933053 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
3 Hb_000161_030 0.0962183165 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
4 Hb_006029_010 0.1027411419 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_022288_010 0.1031023193 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
6 Hb_154381_050 0.1036820627 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006091_030 0.1075913003 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
8 Hb_000016_110 0.1077254633 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
9 Hb_002675_190 0.1144420747 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001633_110 0.1163275308 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
11 Hb_012055_020 0.1205104719 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
12 Hb_000395_140 0.1233588827 - - Oligopeptide transporter, putative [Ricinus communis]
13 Hb_019613_020 0.1258721552 - - phospholipase C, putative [Ricinus communis]
14 Hb_000491_080 0.1266300791 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
15 Hb_000413_130 0.1281592703 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_011496_010 0.1288035174 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
17 Hb_029281_010 0.1303347362 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
18 Hb_000497_140 0.1306073198 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
19 Hb_003734_130 0.1313033458 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
20 Hb_011671_330 0.1317828171 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000208_290 Hb_000208_290 Hb_004156_060 Hb_004156_060 Hb_000208_290--Hb_004156_060 Hb_000161_030 Hb_000161_030 Hb_000208_290--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_000208_290--Hb_006029_010 Hb_022288_010 Hb_022288_010 Hb_000208_290--Hb_022288_010 Hb_154381_050 Hb_154381_050 Hb_000208_290--Hb_154381_050 Hb_006091_030 Hb_006091_030 Hb_000208_290--Hb_006091_030 Hb_004156_060--Hb_154381_050 Hb_004156_060--Hb_006029_010 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_004156_060--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_004156_060--Hb_012055_020 Hb_000161_030--Hb_006029_010 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_008528_010 Hb_008528_010 Hb_022288_010--Hb_008528_010 Hb_000016_110 Hb_000016_110 Hb_022288_010--Hb_000016_110 Hb_000805_310 Hb_000805_310 Hb_022288_010--Hb_000805_310 Hb_174865_050 Hb_174865_050 Hb_022288_010--Hb_174865_050 Hb_011496_010 Hb_011496_010 Hb_022288_010--Hb_011496_010 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_005410_010 Hb_005410_010 Hb_154381_050--Hb_005410_010 Hb_002172_030 Hb_002172_030 Hb_154381_050--Hb_002172_030 Hb_154381_050--Hb_006029_010 Hb_012654_020 Hb_012654_020 Hb_154381_050--Hb_012654_020 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_006091_030--Hb_000016_110 Hb_006091_030--Hb_000413_130 Hb_006091_030--Hb_000078_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
143.062 31.3899 8.40573 11.503 219.861 231.847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6412 45.2941 130.722 37.6696 8.25372

CAGE analysis