Hb_002377_050

Information

Type -
Description -
Location Contig2377: 89402-98130
Sequence    

Annotation

kegg
ID rcu:RCOM_1619080
description Agmatine deiminase, putative (EC:3.5.3.12)
nr
ID XP_002512017.1
description Agmatine deiminase, putative [Ricinus communis]
swissprot
ID Q8GWW7
description Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2
trembl
ID B9RE78
description Agmatine deiminase, putative OS=Ricinus communis GN=RCOM_1619080 PE=3 SV=1
Gene Ontology
ID GO:0004668
description agmatine deiminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24973: 89367-98181
cDNA
(Sanger)
(ID:Location)		 031_J09.ab1: 93368-98172

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002377_050 0.0 - - Agmatine deiminase, putative [Ricinus communis]
2 Hb_002169_010 0.075880305 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_000176_140 0.0764318177 - - PREDICTED: bystin [Jatropha curcas]
4 Hb_001776_080 0.0816576297 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_000491_080 0.0832216435 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
6 Hb_001433_170 0.0843422331 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
7 Hb_127979_010 0.0865865267 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
8 Hb_002249_140 0.0871773808 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
9 Hb_002044_090 0.087624909 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
10 Hb_000179_250 0.0876292631 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
11 Hb_000161_030 0.091322788 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
12 Hb_160818_010 0.091899679 - - -
13 Hb_029281_010 0.0919841492 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
14 Hb_011316_030 0.0924922535 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
15 Hb_005914_230 0.0942144474 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
16 Hb_000078_130 0.0949923831 - - -
17 Hb_001514_200 0.0955485011 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
18 Hb_000733_060 0.0957332574 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
19 Hb_002818_040 0.098151736 - - tRNA synthetase-related family protein [Populus trichocarpa]
20 Hb_003384_030 0.0993217901 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]

Gene co-expression network

sample Hb_002377_050 Hb_002377_050 Hb_002169_010 Hb_002169_010 Hb_002377_050--Hb_002169_010 Hb_000176_140 Hb_000176_140 Hb_002377_050--Hb_000176_140 Hb_001776_080 Hb_001776_080 Hb_002377_050--Hb_001776_080 Hb_000491_080 Hb_000491_080 Hb_002377_050--Hb_000491_080 Hb_001433_170 Hb_001433_170 Hb_002377_050--Hb_001433_170 Hb_127979_010 Hb_127979_010 Hb_002377_050--Hb_127979_010 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_011496_010 Hb_011496_010 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_000176_140--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_000176_140--Hb_000179_250 Hb_000176_140--Hb_001776_080 Hb_002044_090 Hb_002044_090 Hb_000176_140--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000176_140--Hb_011316_030 Hb_002681_140 Hb_002681_140 Hb_000176_140--Hb_002681_140 Hb_000320_440 Hb_000320_440 Hb_001776_080--Hb_000320_440 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_001776_080--Hb_000179_250 Hb_001776_080--Hb_011316_030 Hb_000491_080--Hb_160818_010 Hb_000491_080--Hb_011316_030 Hb_000491_080--Hb_001776_080 Hb_000491_080--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_000491_080--Hb_006029_010 Hb_000057_060 Hb_000057_060 Hb_001433_170--Hb_000057_060 Hb_001433_170--Hb_127979_010 Hb_001433_170--Hb_000179_250 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_127979_010--Hb_026048_090 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
306.121 84.0404 23.2626 34.0741 388.1 304.456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
222.304 121.21 182.398 93.2457 12.8108

CAGE analysis