Hb_000230_110

Information

Type -
Description -
Location Contig230: 136856-137962
Sequence    

Annotation

kegg
ID rcu:RCOM_1429070
description hypothetical protein
nr
ID XP_012089186.1
description PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23992: 136521-138191
cDNA
(Sanger)
(ID:Location)		 002_E22.ab1: 136521-137343 , 003_M10.ab1: 136521-137293 , 007_P01.ab1: 136526-137323 , 016_N13.ab1: 136552-137281 , 027_J01.ab1: 136521-137118 , 040_L05.ab1: 136552-137390 , 052_J09.ab1: 136521-137266

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_110 0.0 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
2 Hb_003404_030 0.0932940944 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_012055_020 0.097798062 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
4 Hb_176022_020 0.0985366256 - - cytochrome P450, putative [Ricinus communis]
5 Hb_006029_010 0.1042963587 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
6 Hb_004156_060 0.1044322667 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
7 Hb_000088_040 0.1047309052 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
8 Hb_000161_030 0.1054218436 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_000078_130 0.1087267704 - - -
10 Hb_000208_240 0.1120777579 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
11 Hb_182026_010 0.1128178996 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
12 Hb_002422_060 0.1131389467 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
13 Hb_002631_050 0.1140099807 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_154381_050 0.1162952414 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002200_110 0.1181256157 - - conserved hypothetical protein [Ricinus communis]
16 Hb_185467_020 0.1203918092 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_000733_060 0.1224517849 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
18 Hb_005288_160 0.1239062209 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
19 Hb_002078_040 0.1239379277 - - protein with unknown function [Ricinus communis]
20 Hb_012340_010 0.1242786671 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_110 Hb_000230_110 Hb_003404_030 Hb_003404_030 Hb_000230_110--Hb_003404_030 Hb_012055_020 Hb_012055_020 Hb_000230_110--Hb_012055_020 Hb_176022_020 Hb_176022_020 Hb_000230_110--Hb_176022_020 Hb_006029_010 Hb_006029_010 Hb_000230_110--Hb_006029_010 Hb_004156_060 Hb_004156_060 Hb_000230_110--Hb_004156_060 Hb_000088_040 Hb_000088_040 Hb_000230_110--Hb_000088_040 Hb_000057_060 Hb_000057_060 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_012055_020--Hb_176022_020 Hb_005227_070 Hb_005227_070 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_019613_020 Hb_019613_020 Hb_176022_020--Hb_019613_020 Hb_176022_020--Hb_000088_040 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_007786_010 Hb_007786_010 Hb_006029_010--Hb_007786_010 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_154381_050 Hb_154381_050 Hb_004156_060--Hb_154381_050 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_004156_060--Hb_176022_020 Hb_004156_060--Hb_012055_020 Hb_000088_040--Hb_003404_030 Hb_000088_040--Hb_012055_020 Hb_098993_010 Hb_098993_010 Hb_000088_040--Hb_098993_010 Hb_000088_040--Hb_005227_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
452.786 66.8642 13.7822 136.521 636.042 484.248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
211.064 228.87 397.977 83.0086 47.5973

CAGE analysis