Hb_010174_130

Information

Type -
Description -
Location Contig10174: 111748-126322
Sequence    

Annotation

kegg
ID pop:POPTR_0008s18180g
description POPTRDRAFT_720911; hypothetical protein
nr
ID XP_012085566.1
description PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
swissprot
ID Q8H1F2
description Regulator of G-protein signaling 1 OS=Arabidopsis thaliana GN=RGS1 PE=1 SV=1
trembl
ID B9HLC2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s18180g PE=4 SV=2
Gene Ontology
ID GO:0005634
description regulator of g-protein signaling 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00851: 111712-113763 , PASA_asmbl_00852: 119948-122322 , PASA_asmbl_00853: 122500-126100
cDNA
(Sanger)
(ID:Location)		 007_C14.ab1: 112094-113669 , 017_E05.ab1: 113235-113763 , 038_E05.ab1: 112122-113669

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_130 0.0 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
2 Hb_001001_160 0.0805359028 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
3 Hb_002506_010 0.081049086 - - choline transporter-related family protein [Populus trichocarpa]
4 Hb_000696_110 0.0834995537 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
5 Hb_003404_030 0.0838748677 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_000029_030 0.0892123767 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_000025_200 0.0921336939 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
8 Hb_000057_060 0.0932480027 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
9 Hb_001439_120 0.0939627397 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000556_080 0.0939638537 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
11 Hb_002014_080 0.0974092827 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
12 Hb_000258_430 0.0989828382 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_010174_120 0.0996660098 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
14 Hb_000049_040 0.1005667845 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
15 Hb_000538_210 0.1030441095 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000387_080 0.1030951909 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
17 Hb_002368_050 0.1033946765 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007919_050 0.1037051125 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
19 Hb_001476_100 0.1037405274 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001017_090 0.1039992928 - - -

Gene co-expression network

sample Hb_010174_130 Hb_010174_130 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_000029_030 Hb_000029_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_001001_160--Hb_000025_200 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_000771_110 Hb_000771_110 Hb_001001_160--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040 Hb_009510_030 Hb_009510_030 Hb_002506_010--Hb_009510_030 Hb_002506_010--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_002506_010--Hb_000057_060 Hb_001017_090 Hb_001017_090 Hb_002506_010--Hb_001017_090 Hb_000387_080 Hb_000387_080 Hb_002506_010--Hb_000387_080 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_003404_030--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_002368_050 Hb_002368_050 Hb_000029_030--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080 Hb_000025_200--Hb_000001_020 Hb_007908_020 Hb_007908_020 Hb_000025_200--Hb_007908_020 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.8114 4.52024 6.546 13.4557 54.1872 54.43
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.4549 26.6977 50.9694 10.2597 5.82892

CAGE analysis