Hb_002368_050

Information

Type -
Description -
Location Contig2368: 94686-99554
Sequence    

Annotation

kegg
ID rcu:RCOM_0629290
description hypothetical protein
nr
ID XP_002527792.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A0JMW6
description Transmembrane protein 214-A OS=Xenopus laevis GN=tmem214-a PE=2 SV=1
trembl
ID B9SP73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24768: 94679-99486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006693_030 0.0670417999 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
3 Hb_000029_030 0.0693768531 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
4 Hb_000956_010 0.076776735 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
5 Hb_000025_200 0.0781884615 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
6 Hb_011224_080 0.080241906 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
7 Hb_007908_020 0.0846012991 - - zinc finger family protein [Populus trichocarpa]
8 Hb_002603_100 0.0870932793 - - ATATH9, putative [Ricinus communis]
9 Hb_002498_100 0.0886415291 - - bcr-associated protein, bap, putative [Ricinus communis]
10 Hb_007919_050 0.0894873951 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
11 Hb_000173_170 0.091046435 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
12 Hb_022250_040 0.095117456 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
13 Hb_000975_290 0.0955049983 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_183086_060 0.0956157702 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
15 Hb_023386_080 0.0959255758 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
16 Hb_004899_320 0.0959724032 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
17 Hb_001439_120 0.0960845758 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010638_020 0.0960892851 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
19 Hb_001396_180 0.0962551195 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
20 Hb_007152_020 0.096332094 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002368_050 Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_002368_050--Hb_006693_030 Hb_000029_030 Hb_000029_030 Hb_002368_050--Hb_000029_030 Hb_000956_010 Hb_000956_010 Hb_002368_050--Hb_000956_010 Hb_000025_200 Hb_000025_200 Hb_002368_050--Hb_000025_200 Hb_011224_080 Hb_011224_080 Hb_002368_050--Hb_011224_080 Hb_007908_020 Hb_007908_020 Hb_002368_050--Hb_007908_020 Hb_006693_030--Hb_000956_010 Hb_004899_320 Hb_004899_320 Hb_006693_030--Hb_004899_320 Hb_006693_030--Hb_011224_080 Hb_006693_030--Hb_000029_030 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_000029_030--Hb_011224_080 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_000001_020 Hb_000001_020 Hb_000025_200--Hb_000001_020 Hb_000025_200--Hb_007908_020 Hb_001001_160 Hb_001001_160 Hb_000025_200--Hb_001001_160 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_002973_080 Hb_002973_080 Hb_000025_200--Hb_002973_080 Hb_002659_140 Hb_002659_140 Hb_011224_080--Hb_002659_140 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.6805 11.9539 16.1674 18.8043 64.5522 71.1482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.2139 57.3917 82.6146 13.5465 12.1503

CAGE analysis