Hb_004899_320

Information

Type -
Description -
Location Contig4899: 255846-264491
Sequence    

Annotation

kegg
ID pmum:103340614
description oligouridylate-binding protein 1-like
nr
ID XP_012077083.1
description PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
swissprot
ID Q9M427
description Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1
trembl
ID A0A067KCI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07512 PE=4 SV=1
Gene Ontology
ID GO:0000166
description oligouridylate-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45216: 255950-262463 , PASA_asmbl_45217: 255937-264329 , PASA_asmbl_45218: 263977-264324 , PASA_asmbl_45220: 261382-263955 , PASA_asmbl_45221: 260857-264324
cDNA
(Sanger)
(ID:Location)		 012_P07.ab1: 260995-264324 , 034_G09.ab1: 260857-264324 , 043_E18.ab1: 260978-264324

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_320 0.0 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
2 Hb_005488_010 0.0569299856 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000836_070 0.0673641905 - - protein binding protein, putative [Ricinus communis]
4 Hb_006693_030 0.0678429487 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
5 Hb_001366_200 0.0733695729 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000956_010 0.0743136122 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
7 Hb_000329_040 0.074493875 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
8 Hb_001427_120 0.0771407811 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
9 Hb_000205_270 0.0780186738 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
10 Hb_000376_050 0.0781887142 - - polyadenylate-binding protein, putative [Ricinus communis]
11 Hb_000883_050 0.0795188726 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
12 Hb_008289_060 0.0803077175 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
13 Hb_002716_070 0.0810897298 - - PREDICTED: protein ABIL2 [Jatropha curcas]
14 Hb_001243_050 0.0820793939 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
15 Hb_055062_030 0.082282837 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
16 Hb_023386_080 0.0842721268 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
17 Hb_011794_070 0.0845515383 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
18 Hb_001718_100 0.0857373591 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_008311_010 0.0858671603 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
20 Hb_000260_080 0.0860939662 - - thioredoxin H-type 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004899_320 Hb_004899_320 Hb_005488_010 Hb_005488_010 Hb_004899_320--Hb_005488_010 Hb_000836_070 Hb_000836_070 Hb_004899_320--Hb_000836_070 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_000956_010 Hb_000956_010 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040 Hb_016065_010 Hb_016065_010 Hb_005488_010--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_003018_190 Hb_003018_190 Hb_000836_070--Hb_003018_190 Hb_006693_030--Hb_000956_010 Hb_002368_050 Hb_002368_050 Hb_006693_030--Hb_002368_050 Hb_011224_080 Hb_011224_080 Hb_006693_030--Hb_011224_080 Hb_000029_030 Hb_000029_030 Hb_006693_030--Hb_000029_030 Hb_004662_030 Hb_004662_030 Hb_006693_030--Hb_004662_030 Hb_001366_200--Hb_005488_010 Hb_002411_200 Hb_002411_200 Hb_001366_200--Hb_002411_200 Hb_001366_200--Hb_000836_070 Hb_002716_070 Hb_002716_070 Hb_001366_200--Hb_002716_070 Hb_001366_200--Hb_008289_060 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_000260_080 Hb_000260_080 Hb_000329_040--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000329_040--Hb_011794_070 Hb_000329_040--Hb_023386_080 Hb_000329_040--Hb_000376_050 Hb_000703_140 Hb_000703_140 Hb_000329_040--Hb_000703_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
213.524 59.2613 46.6116 62.9693 178.33 272.863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
305.36 340.877 339.662 54.8854 74.7433

CAGE analysis