Hb_000836_070

Information

Type -
Description -
Location Contig836: 97219-100536
Sequence    

Annotation

kegg
ID rcu:RCOM_1616120
description protein binding protein, putative
nr
ID XP_002511886.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID B9RDU7
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1616120 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59916: 98807-100226 , PASA_asmbl_59917: 97267-100939 , PASA_asmbl_59918: 97267-99507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_070 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_005488_010 0.0651008679 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004899_320 0.0673641905 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
4 Hb_000923_070 0.0751684938 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008453_090 0.0756425735 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
6 Hb_010710_040 0.0785986024 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003018_190 0.0805761687 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
8 Hb_000983_100 0.0815435084 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
9 Hb_131864_040 0.0823216065 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
10 Hb_001671_020 0.0835736312 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
11 Hb_008311_010 0.0844117739 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
12 Hb_000376_050 0.0846987044 - - polyadenylate-binding protein, putative [Ricinus communis]
13 Hb_000205_270 0.0859201335 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
14 Hb_000956_010 0.0859851041 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
15 Hb_001366_200 0.0874368845 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001243_050 0.0876461995 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
17 Hb_016065_010 0.0879512318 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
18 Hb_055062_030 0.0888362727 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
19 Hb_000059_220 0.0891439981 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
20 Hb_000457_150 0.0904419102 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000836_070 Hb_000836_070 Hb_005488_010 Hb_005488_010 Hb_000836_070--Hb_005488_010 Hb_004899_320 Hb_004899_320 Hb_000836_070--Hb_004899_320 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_003018_190 Hb_003018_190 Hb_000836_070--Hb_003018_190 Hb_016065_010 Hb_016065_010 Hb_005488_010--Hb_016065_010 Hb_005488_010--Hb_004899_320 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_001366_200 Hb_001366_200 Hb_004899_320--Hb_001366_200 Hb_000956_010 Hb_000956_010 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040 Hb_000376_050 Hb_000376_050 Hb_000923_070--Hb_000376_050 Hb_002307_030 Hb_002307_030 Hb_000923_070--Hb_002307_030 Hb_001243_050 Hb_001243_050 Hb_000923_070--Hb_001243_050 Hb_000923_070--Hb_000956_010 Hb_003216_100 Hb_003216_100 Hb_000923_070--Hb_003216_100 Hb_004951_040 Hb_004951_040 Hb_008453_090--Hb_004951_040 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_008453_090--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130 Hb_000997_400 Hb_000997_400 Hb_010710_040--Hb_000997_400 Hb_010710_040--Hb_003018_190 Hb_000457_150 Hb_000457_150 Hb_010710_040--Hb_000457_150 Hb_000156_100 Hb_000156_100 Hb_010710_040--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_010710_040--Hb_006846_110 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_003018_190--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.4015 24.2784 10.6326 17.1208 52.3335 84.3423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.4004 92.2937 115.482 18.7151 13.5608

CAGE analysis