Hb_131864_040

Information

Type -
Description -
Location Contig131864: 29740-33206
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03420g
description POPTRDRAFT_660497; (2R)-phospho-3-sulfolactate synthase-related family protein
nr
ID XP_012091430.1
description PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
swissprot
ID O27710
description Phosphosulfolactate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
trembl
ID A0A067JLE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21296 PE=4 SV=1
Gene Ontology
ID GO:0043817
description phosphosulfolactate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09245: 29736-33196
cDNA
(Sanger)
(ID:Location)		 052_A23.ab1: 31624-33196

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131864_040 0.0 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
2 Hb_002603_160 0.0609920866 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
3 Hb_003018_190 0.0647903829 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
4 Hb_016065_010 0.0673677523 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
5 Hb_006846_110 0.0719859535 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
6 Hb_005488_010 0.07282867 - - conserved hypothetical protein [Ricinus communis]
7 Hb_055062_030 0.0817401363 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
8 Hb_000836_070 0.0823216065 - - protein binding protein, putative [Ricinus communis]
9 Hb_000671_150 0.0827175635 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
10 Hb_008453_090 0.0840003667 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
11 Hb_000997_400 0.0841769604 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
12 Hb_000223_150 0.0848362553 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
13 Hb_008289_060 0.0851807356 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_000205_270 0.085939029 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
15 Hb_000200_340 0.0870581752 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_007943_090 0.0898920789 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
17 Hb_000009_160 0.0914704863 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
18 Hb_000200_050 0.0918218735 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_003408_030 0.0924707512 - - PREDICTED: protein YIF1B [Jatropha curcas]
20 Hb_010710_040 0.0931611968 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_131864_040 Hb_131864_040 Hb_002603_160 Hb_002603_160 Hb_131864_040--Hb_002603_160 Hb_003018_190 Hb_003018_190 Hb_131864_040--Hb_003018_190 Hb_016065_010 Hb_016065_010 Hb_131864_040--Hb_016065_010 Hb_006846_110 Hb_006846_110 Hb_131864_040--Hb_006846_110 Hb_005488_010 Hb_005488_010 Hb_131864_040--Hb_005488_010 Hb_055062_030 Hb_055062_030 Hb_131864_040--Hb_055062_030 Hb_002603_160--Hb_003018_190 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_001141_280 Hb_001141_280 Hb_002603_160--Hb_001141_280 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_003018_190--Hb_006846_110 Hb_000205_270 Hb_000205_270 Hb_016065_010--Hb_000205_270 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_006846_110--Hb_008453_090 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_005488_010--Hb_055062_030 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_055062_030--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.564 40.5031 15.9297 28.4673 84.7734 107.63
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.563 149.587 207.186 50.2505 26.5104

CAGE analysis