Hb_007747_200

Information

Type -
Description -
Location Contig7747: 156995-158635
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22400g
description POPTRDRAFT_763046; hypothetical protein
nr
ID XP_012074383.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
swissprot
ID Q9FHR3
description Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
trembl
ID B9HBW1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22400g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57757: 156952-157337 , PASA_asmbl_57759: 158322-158694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_200 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
2 Hb_000019_130 0.0682787675 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
3 Hb_000317_280 0.0725804972 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
4 Hb_006846_110 0.0768155093 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
5 Hb_000343_130 0.0790892254 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
6 Hb_000002_050 0.0831141435 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
7 Hb_016901_010 0.0832775048 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
8 Hb_000935_050 0.0852894205 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
9 Hb_000193_290 0.0865542494 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
10 Hb_000457_150 0.087084838 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_001969_090 0.0872222937 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
12 Hb_000635_220 0.0884557531 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
13 Hb_000723_080 0.090711837 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_000997_400 0.0921934003 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
15 Hb_003687_240 0.0925160236 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
16 Hb_000805_020 0.0970688421 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_003687_100 0.0987503123 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_000297_200 0.0987753311 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
19 Hb_025557_030 0.0991119645 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
20 Hb_001454_190 0.0991214998 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]

Gene co-expression network

sample Hb_007747_200 Hb_007747_200 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_000317_280 Hb_000317_280 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_027472_170 Hb_027472_170 Hb_000019_130--Hb_027472_170 Hb_000935_050 Hb_000935_050 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_000317_280--Hb_000343_130 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_000635_220 Hb_000635_220 Hb_000317_280--Hb_000635_220 Hb_001969_090 Hb_001969_090 Hb_000317_280--Hb_001969_090 Hb_000317_280--Hb_006846_110 Hb_131864_040 Hb_131864_040 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090 Hb_000343_130--Hb_000635_220 Hb_000343_130--Hb_016901_010 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_001454_190 Hb_001454_190 Hb_000002_050--Hb_001454_190 Hb_004846_070 Hb_004846_070 Hb_000002_050--Hb_004846_070 Hb_000002_050--Hb_016901_010 Hb_000002_050--Hb_000019_130 Hb_001373_180 Hb_001373_180 Hb_000002_050--Hb_001373_180 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.13302 4.96631 0.831545 1.85559 3.40802 6.34148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3122 8.53567 12.328 4.29591 2.60665

CAGE analysis