Hb_001338_040

Information

Type transcription factor
Description TF Family: C3H
Location Contig1338: 81065-84224
Sequence    

Annotation

kegg
ID rcu:RCOM_0089240
description nucleic acid binding protein, putative
nr
ID XP_002526718.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID P93755
description Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
trembl
ID B9SL49
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0089240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger ccch domain-containing protein 30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09517: 79696-84203 , PASA_asmbl_09518: 80524-80966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_040 0.0 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000317_280 0.0854118937 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
3 Hb_000574_350 0.0877470679 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
4 Hb_002056_060 0.0997513411 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
5 Hb_007747_200 0.1021297476 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
6 Hb_000836_080 0.1048954725 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
7 Hb_000935_050 0.1157392791 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
8 Hb_001699_130 0.1158478423 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
9 Hb_019654_090 0.1159762772 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
10 Hb_004993_050 0.1167793489 - - -
11 Hb_001969_090 0.1189485966 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
12 Hb_007075_050 0.1194153093 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_025557_030 0.1196828611 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
14 Hb_007645_080 0.1207110079 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
15 Hb_000019_060 0.1222400805 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
16 Hb_000696_040 0.1227547087 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000019_130 0.1238796468 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
18 Hb_006846_110 0.124081453 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
19 Hb_027472_170 0.1263522357 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
20 Hb_001314_020 0.1280118671 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001338_040 Hb_001338_040 Hb_000317_280 Hb_000317_280 Hb_001338_040--Hb_000317_280 Hb_000574_350 Hb_000574_350 Hb_001338_040--Hb_000574_350 Hb_002056_060 Hb_002056_060 Hb_001338_040--Hb_002056_060 Hb_007747_200 Hb_007747_200 Hb_001338_040--Hb_007747_200 Hb_000836_080 Hb_000836_080 Hb_001338_040--Hb_000836_080 Hb_000935_050 Hb_000935_050 Hb_001338_040--Hb_000935_050 Hb_000317_280--Hb_007747_200 Hb_000343_130 Hb_000343_130 Hb_000317_280--Hb_000343_130 Hb_000635_220 Hb_000635_220 Hb_000317_280--Hb_000635_220 Hb_001969_090 Hb_001969_090 Hb_000317_280--Hb_001969_090 Hb_006846_110 Hb_006846_110 Hb_000317_280--Hb_006846_110 Hb_000019_130 Hb_000019_130 Hb_000574_350--Hb_000019_130 Hb_000574_350--Hb_000935_050 Hb_000019_060 Hb_000019_060 Hb_000574_350--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_000574_350--Hb_027472_170 Hb_007075_050 Hb_007075_050 Hb_000574_350--Hb_007075_050 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_006846_110 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_000156_100 Hb_000156_100 Hb_000836_080--Hb_000156_100 Hb_000836_080--Hb_006846_110 Hb_003943_030 Hb_003943_030 Hb_000836_080--Hb_003943_030 Hb_131864_040 Hb_131864_040 Hb_000836_080--Hb_131864_040 Hb_000836_080--Hb_007747_200 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_000935_050--Hb_007075_050 Hb_000935_050--Hb_000019_130 Hb_000935_050--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_000935_050--Hb_007747_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1061 37.0416 4.24481 13.5407 26.9439 23.141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.9578 78.4774 94.9535 33.6811 12.4685

CAGE analysis