Hb_003943_030

Information

Type -
Description -
Location Contig3943: 39845-42557
Sequence    

Annotation

kegg
ID rcu:RCOM_0519570
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012075015.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
swissprot
ID P0C7R0
description Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1
trembl
ID A0A067LBT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11844 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
2 Hb_001959_160 0.0689254815 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
3 Hb_000749_250 0.0872782285 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
4 Hb_001232_130 0.0877855208 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
5 Hb_007429_030 0.0894134704 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
6 Hb_000156_100 0.1003637264 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
7 Hb_002290_040 0.1027631272 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000836_080 0.1029411823 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
9 Hb_008085_040 0.1070400171 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
10 Hb_002897_060 0.1083037947 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
11 Hb_002794_030 0.1144708394 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
12 Hb_000223_150 0.1155792902 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
13 Hb_183612_100 0.1157530181 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
14 Hb_003408_030 0.117077908 - - PREDICTED: protein YIF1B [Jatropha curcas]
15 Hb_000059_220 0.1170995502 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
16 Hb_007229_060 0.1179704952 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
17 Hb_131864_040 0.1183780332 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
18 Hb_143629_090 0.1204609595 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
19 Hb_002936_050 0.1214744239 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
20 Hb_001278_050 0.1221656905 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]

Gene co-expression network

sample Hb_003943_030 Hb_003943_030 Hb_001959_160 Hb_001959_160 Hb_003943_030--Hb_001959_160 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_002290_040 Hb_001153_220 Hb_001153_220 Hb_001959_160--Hb_001153_220 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_000749_250--Hb_001232_130 Hb_001143_090 Hb_001143_090 Hb_000749_250--Hb_001143_090 Hb_163950_010 Hb_163950_010 Hb_000749_250--Hb_163950_010 Hb_000749_250--Hb_001959_160 Hb_001946_320 Hb_001946_320 Hb_000749_250--Hb_001946_320 Hb_002307_090 Hb_002307_090 Hb_001232_130--Hb_002307_090 Hb_001232_130--Hb_001946_320 Hb_010589_040 Hb_010589_040 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_003504_020 Hb_003504_020 Hb_007429_030--Hb_003504_020 Hb_025214_130 Hb_025214_130 Hb_007429_030--Hb_025214_130 Hb_004414_050 Hb_004414_050 Hb_007429_030--Hb_004414_050 Hb_019654_090 Hb_019654_090 Hb_007429_030--Hb_019654_090 Hb_007429_030--Hb_001959_160 Hb_000836_080 Hb_000836_080 Hb_000156_100--Hb_000836_080 Hb_010710_040 Hb_010710_040 Hb_000156_100--Hb_010710_040 Hb_002794_030 Hb_002794_030 Hb_000156_100--Hb_002794_030 Hb_000983_100 Hb_000983_100 Hb_000156_100--Hb_000983_100 Hb_000836_070 Hb_000836_070 Hb_000156_100--Hb_000836_070 Hb_007229_060 Hb_007229_060 Hb_000156_100--Hb_007229_060 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_002290_040--Hb_001153_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87856 1.40851 0.213832 0.481712 2.16809 2.59705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.43818 5.0826 9.31637 1.26523 0.511854

CAGE analysis