Hb_004414_050

Information

Type -
Description -
Location Contig4414: 69834-71633
Sequence    

Annotation

kegg
ID rcu:RCOM_0742750
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002525536.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZQF1
description Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1
trembl
ID B9SHR7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0742750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004414_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_007429_030 0.1087106875 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
3 Hb_000125_030 0.1129187959 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
4 Hb_004410_100 0.1162961059 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
5 Hb_000019_060 0.1164203853 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
6 Hb_004128_180 0.1233262761 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001159_080 0.1236700992 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
8 Hb_002056_060 0.1244990085 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_025214_130 0.1247291887 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
10 Hb_003551_050 0.1286481679 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
11 Hb_019654_090 0.130415304 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
12 Hb_000406_120 0.1335579566 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_027402_070 0.1348754116 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_003504_020 0.1359453062 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
15 Hb_003642_050 0.1380230665 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
16 Hb_000976_360 0.1385483692 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
17 Hb_011030_020 0.1392659265 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
18 Hb_002301_230 0.1393506902 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
19 Hb_003018_190 0.1426007228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
20 Hb_007747_200 0.1439960734 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]

Gene co-expression network

sample Hb_004414_050 Hb_004414_050 Hb_007429_030 Hb_007429_030 Hb_004414_050--Hb_007429_030 Hb_000125_030 Hb_000125_030 Hb_004414_050--Hb_000125_030 Hb_004410_100 Hb_004410_100 Hb_004414_050--Hb_004410_100 Hb_000019_060 Hb_000019_060 Hb_004414_050--Hb_000019_060 Hb_004128_180 Hb_004128_180 Hb_004414_050--Hb_004128_180 Hb_001159_080 Hb_001159_080 Hb_004414_050--Hb_001159_080 Hb_003943_030 Hb_003943_030 Hb_007429_030--Hb_003943_030 Hb_003504_020 Hb_003504_020 Hb_007429_030--Hb_003504_020 Hb_025214_130 Hb_025214_130 Hb_007429_030--Hb_025214_130 Hb_019654_090 Hb_019654_090 Hb_007429_030--Hb_019654_090 Hb_001959_160 Hb_001959_160 Hb_007429_030--Hb_001959_160 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_000236_140 Hb_000236_140 Hb_004410_100--Hb_000236_140 Hb_004410_100--Hb_004128_180 Hb_119600_040 Hb_119600_040 Hb_004410_100--Hb_119600_040 Hb_006647_020 Hb_006647_020 Hb_004410_100--Hb_006647_020 Hb_003551_050 Hb_003551_050 Hb_004410_100--Hb_003551_050 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_000019_060--Hb_019654_090 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_004128_180--Hb_000236_140 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000059_220 Hb_000059_220 Hb_004128_180--Hb_000059_220 Hb_027472_170 Hb_027472_170 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000141_020 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.64652 3.89257 1.30565 3.9548 1.82062 7.08155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.03679 14.0804 24.5057 5.68737 2.44002

CAGE analysis