Hb_003504_020

Information

Type -
Description -
Location Contig3504: 12281-16591
Sequence    

Annotation

kegg
ID rcu:RCOM_0608880
description hypothetical protein
nr
ID XP_012089316.1
description PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
swissprot
ID Q9QXN3
description Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2
trembl
ID A0A067JW31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36486: 12216-16572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003504_020 0.0 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
2 Hb_007382_150 0.0871399764 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
3 Hb_007429_030 0.0916327413 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
4 Hb_000141_020 0.0934443974 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
5 Hb_000125_030 0.0934959683 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
6 Hb_024714_060 0.0984534219 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
7 Hb_003579_030 0.1044887794 - - phosphatase 2C family protein [Populus trichocarpa]
8 Hb_001575_020 0.1063377494 - - conserved hypothetical protein [Ricinus communis]
9 Hb_020301_040 0.1067127934 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
10 Hb_000196_080 0.1100268747 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
11 Hb_001329_210 0.1102183267 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_003929_120 0.1116741028 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
13 Hb_002097_060 0.1121649595 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_001006_180 0.113745561 - - PREDICTED: endonuclease V-like [Jatropha curcas]
15 Hb_000165_010 0.11391399 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
16 Hb_003581_260 0.116215705 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
17 Hb_000406_120 0.1183040049 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_001956_070 0.1186343781 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
19 Hb_019654_090 0.1198833766 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
20 Hb_003642_050 0.1212433406 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003504_020 Hb_003504_020 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_000141_020 Hb_000141_020 Hb_003504_020--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_003504_020--Hb_000125_030 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_001616_060 Hb_001616_060 Hb_007382_150--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_007382_150--Hb_002097_060 Hb_006573_220 Hb_006573_220 Hb_007382_150--Hb_006573_220 Hb_000069_100 Hb_000069_100 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_003943_030 Hb_003943_030 Hb_007429_030--Hb_003943_030 Hb_025214_130 Hb_025214_130 Hb_007429_030--Hb_025214_130 Hb_004414_050 Hb_004414_050 Hb_007429_030--Hb_004414_050 Hb_019654_090 Hb_019654_090 Hb_007429_030--Hb_019654_090 Hb_001959_160 Hb_001959_160 Hb_007429_030--Hb_001959_160 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_001006_180 Hb_001006_180 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030 Hb_002876_120 Hb_002876_120 Hb_003579_030--Hb_002876_120 Hb_002999_050 Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0922 21.2256 12.2229 13.1709 13.3177 29.0401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.1296 99.0073 117.778 18.4305 9.92663

CAGE analysis