Hb_003579_030

Information

Type -
Description -
Location Contig3579: 39773-43476
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09750g
description POPTRDRAFT_551580; hypothetical protein
nr
ID XP_002301055.1
description phosphatase 2C family protein [Populus trichocarpa]
swissprot
ID Q9LME4
description Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1
trembl
ID B9GUW5
description Phosphatase 2C family protein OS=Populus trichocarpa GN=POPTR_0002s09750g PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36862: 40028-40536 , PASA_asmbl_36864: 38558-41692 , PASA_asmbl_36865: 41822-43434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003579_030 0.0 - - phosphatase 2C family protein [Populus trichocarpa]
2 Hb_002876_120 0.0694148315 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
3 Hb_002999_050 0.07304471 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
4 Hb_002097_060 0.076294785 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_020301_040 0.0827684478 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
6 Hb_001616_030 0.084443326 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
7 Hb_001633_030 0.0852882951 - - -
8 Hb_003376_030 0.0860576273 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
9 Hb_000181_300 0.0897132436 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
10 Hb_003455_040 0.0907086629 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
11 Hb_001575_020 0.0913631953 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003185_050 0.092112969 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
13 Hb_001160_030 0.0928043761 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
14 Hb_001634_040 0.093444426 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
15 Hb_003326_020 0.0934657741 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
16 Hb_001956_070 0.0956569902 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
17 Hb_003994_040 0.0959768076 - - -
18 Hb_000563_240 0.0967959208 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
19 Hb_004375_140 0.0969805675 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
20 Hb_000012_100 0.0972933237 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003579_030 Hb_003579_030 Hb_002876_120 Hb_002876_120 Hb_003579_030--Hb_002876_120 Hb_002999_050 Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_007594_120 Hb_007594_120 Hb_002876_120--Hb_007594_120 Hb_002876_120--Hb_020301_040 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002876_120--Hb_002999_050 Hb_076626_010 Hb_076626_010 Hb_002999_050--Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_002999_050--Hb_010672_070 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_005590_020 Hb_005590_020 Hb_002999_050--Hb_005590_020 Hb_003376_030 Hb_003376_030 Hb_002097_060--Hb_003376_030 Hb_000069_100 Hb_000069_100 Hb_002097_060--Hb_000069_100 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_006573_220 Hb_006573_220 Hb_002097_060--Hb_006573_220 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_000975_300 Hb_000975_300 Hb_020301_040--Hb_000975_300 Hb_020301_040--Hb_007594_120 Hb_004375_140 Hb_004375_140 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_007304_070 Hb_007304_070 Hb_001633_030--Hb_007304_070 Hb_000181_300 Hb_000181_300 Hb_001633_030--Hb_000181_300 Hb_002431_050 Hb_002431_050 Hb_001633_030--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_001633_030--Hb_010672_060 Hb_001633_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_001633_030--Hb_004459_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4594 8.63606 9.56631 7.5198 8.87373 14.4267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8997 59.8483 43.7478 8.62808 9.15032

CAGE analysis