Hb_001616_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig1616: 68040-75722
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24750g
description POPTRDRAFT_553203; hypothetical protein
nr
ID XP_012085059.1
description PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
swissprot
ID Q56XP9
description Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2
trembl
ID A0A067K3H4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17512 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor-like protein at4g13040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14483: 67633-75059 , PASA_asmbl_14484: 68394-75518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001616_030 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
2 Hb_000563_250 0.071815771 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
3 Hb_000240_090 0.0789508493 - - Rab5 [Hevea brasiliensis]
4 Hb_003579_030 0.084443326 - - phosphatase 2C family protein [Populus trichocarpa]
5 Hb_003376_030 0.0865160242 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
6 Hb_001160_030 0.0873492232 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
7 Hb_153112_030 0.0875152576 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
8 Hb_002876_120 0.0912225829 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
9 Hb_028487_030 0.0919730601 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001218_040 0.0922151614 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
11 Hb_004375_140 0.0936845756 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
12 Hb_000347_410 0.0941527691 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
13 Hb_029866_020 0.0947114852 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
14 Hb_004586_320 0.0950945064 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
15 Hb_011671_390 0.0966599398 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
16 Hb_129204_030 0.0975328355 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_000103_010 0.0975914032 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
18 Hb_000680_140 0.0984569557 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
19 Hb_012505_010 0.09857255 - - mak, putative [Ricinus communis]
20 Hb_000146_020 0.0988754597 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001616_030 Hb_001616_030 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_000120_680 Hb_000120_680 Hb_000563_250--Hb_000120_680 Hb_000563_250--Hb_000240_090 Hb_021409_030 Hb_021409_030 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_000240_090--Hb_021409_030 Hb_002876_120 Hb_002876_120 Hb_003579_030--Hb_002876_120 Hb_002999_050 Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_002097_060 Hb_148200_010 Hb_148200_010 Hb_003376_030--Hb_148200_010 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_001160_030--Hb_002097_060 Hb_001616_060 Hb_001616_060 Hb_001160_030--Hb_001616_060 Hb_001575_020 Hb_001575_020 Hb_001160_030--Hb_001575_020 Hb_001160_030--Hb_000146_020 Hb_017948_010 Hb_017948_010 Hb_153112_030--Hb_017948_010 Hb_000680_140 Hb_000680_140 Hb_153112_030--Hb_000680_140 Hb_153112_030--Hb_001633_030 Hb_000173_220 Hb_000173_220 Hb_153112_030--Hb_000173_220 Hb_004459_040 Hb_004459_040 Hb_153112_030--Hb_004459_040 Hb_000181_300 Hb_000181_300 Hb_153112_030--Hb_000181_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7901 9.82224 12.887 7.64517 12.6772 10.8763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0496 46.804 42.2447 10.5069 12.3132

CAGE analysis