Hb_002876_120

Information

Type -
Description -
Location Contig2876: 96555-106633
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11970g
description TYROSINE PHOSPHATASE 1 family protein
nr
ID XP_012081085.1
description PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
swissprot
ID O82656
description Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1 PE=1 SV=1
trembl
ID A0A067KEM2
description Protein-tyrosine-phosphatase OS=Jatropha curcas GN=JCGZ_17149 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein-tyrosine-phosphatase ptp1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30034: 96676-106553 , PASA_asmbl_30035: 96831-106561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_120 0.0 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
2 Hb_007594_120 0.0609171079 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
3 Hb_003579_030 0.0694148315 - - phosphatase 2C family protein [Populus trichocarpa]
4 Hb_020301_040 0.0698403138 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
5 Hb_001157_010 0.0831198144 - - deoxyhypusine synthase, putative [Ricinus communis]
6 Hb_000012_100 0.0837198945 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
7 Hb_002999_050 0.0840664938 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
8 Hb_001575_020 0.0855573458 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002097_060 0.0857053585 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_000069_550 0.0860418318 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
11 Hb_000802_100 0.0862860945 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
12 Hb_003581_260 0.0864090282 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
13 Hb_004375_140 0.0879983381 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
14 Hb_003376_030 0.0891491417 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
15 Hb_002603_150 0.0904580371 - - PREDICTED: protein yippee-like [Jatropha curcas]
16 Hb_001616_030 0.0912225829 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
17 Hb_000181_300 0.0919499434 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
18 Hb_006573_220 0.0919992809 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
19 Hb_000975_300 0.0935445531 - - Rab2 [Hevea brasiliensis]
20 Hb_001160_030 0.0944133139 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]

Gene co-expression network

sample Hb_002876_120 Hb_002876_120 Hb_007594_120 Hb_007594_120 Hb_002876_120--Hb_007594_120 Hb_003579_030 Hb_003579_030 Hb_002876_120--Hb_003579_030 Hb_020301_040 Hb_020301_040 Hb_002876_120--Hb_020301_040 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_000975_300 Hb_000975_300 Hb_007594_120--Hb_000975_300 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_003579_030--Hb_020301_040 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_020301_040--Hb_000975_300 Hb_004375_140 Hb_004375_140 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070 Hb_000181_300 Hb_000181_300 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_003053_030 Hb_003053_030 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_076626_010 Hb_076626_010 Hb_002999_050--Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_002999_050--Hb_010672_070 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_005590_020 Hb_005590_020 Hb_002999_050--Hb_005590_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0439 5.38427 15.1793 11.7173 16.1631 18.9749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.7632 76.6991 67.9081 13.6389 12.992

CAGE analysis