Hb_000975_300

Information

Type -
Description -
Location Contig975: 266495-269106
Sequence    

Annotation

kegg
ID cic:CICLE_v10029259mg
description hypothetical protein
nr
ID AEA92304.1
description Rab2 [Hevea brasiliensis]
swissprot
ID P28186
description Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1
trembl
ID F2VXU2
description Rab2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabe1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64028: 263412-269105
cDNA
(Sanger)
(ID:Location)		 047_K18.ab1: 263454-268798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_300 0.0 - - Rab2 [Hevea brasiliensis]
2 Hb_000062_340 0.0560619252 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
3 Hb_007594_120 0.0715359788 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
4 Hb_020301_040 0.0856219581 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
5 Hb_000963_180 0.0867776737 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
6 Hb_002182_030 0.0927618128 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
7 Hb_002876_120 0.0935445531 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
8 Hb_000023_340 0.0936048545 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
9 Hb_003632_010 0.0939191652 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000377_060 0.0951772785 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_008311_010 0.0999244857 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
12 Hb_000302_220 0.1004279185 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
13 Hb_032803_010 0.1042885535 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
14 Hb_000976_360 0.1050362286 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
15 Hb_027402_070 0.1074176534 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_000061_300 0.1074738029 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
17 Hb_000046_110 0.1075131177 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
18 Hb_001141_280 0.1076953576 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
19 Hb_000431_010 0.1078547287 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
20 Hb_003581_260 0.1084273837 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_000975_300 Hb_000975_300 Hb_000062_340 Hb_000062_340 Hb_000975_300--Hb_000062_340 Hb_007594_120 Hb_007594_120 Hb_000975_300--Hb_007594_120 Hb_020301_040 Hb_020301_040 Hb_000975_300--Hb_020301_040 Hb_000963_180 Hb_000963_180 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_002876_120 Hb_002876_120 Hb_000975_300--Hb_002876_120 Hb_000062_340--Hb_007594_120 Hb_003632_010 Hb_003632_010 Hb_000062_340--Hb_003632_010 Hb_010142_070 Hb_010142_070 Hb_000062_340--Hb_010142_070 Hb_000302_220 Hb_000302_220 Hb_000062_340--Hb_000302_220 Hb_000735_130 Hb_000735_130 Hb_000062_340--Hb_000735_130 Hb_007594_120--Hb_002876_120 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_020301_040--Hb_002876_120 Hb_003579_030 Hb_003579_030 Hb_020301_040--Hb_003579_030 Hb_004375_140 Hb_004375_140 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_000023_340 Hb_000023_340 Hb_000963_180--Hb_000023_340 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_001461_010 Hb_001461_010 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_006472_050 Hb_006472_050 Hb_002182_030--Hb_006472_050 Hb_001135_210 Hb_001135_210 Hb_002182_030--Hb_001135_210 Hb_002182_030--Hb_007594_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260 Hb_002876_120--Hb_003579_030 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.3895 10.6773 38.7952 48.6837 54.9195 85.2489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.943 191.791 238.316 29.364 28.0316

CAGE analysis