Hb_029866_070

Information

Type -
Description -
Location Contig29866: 54846-57584
Sequence    

Annotation

kegg
ID rcu:RCOM_1581280
description hypothetical protein
nr
ID XP_012090128.1
description PREDICTED: myosin IB heavy chain [Jatropha curcas]
swissprot
ID P19706
description Myosin heavy chain IB OS=Acanthamoeba castellanii GN=MIB PE=1 SV=2
trembl
ID A0A067JED2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26013 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin heavy chain ib-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31210: 54895-57487 , PASA_asmbl_31211: 55201-57492
cDNA
(Sanger)
(ID:Location)		 009_I03.ab1: 54895-55683 , 016_H16.ab1: 54895-55608

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_070 0.0 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
2 Hb_000963_180 0.0667344768 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
3 Hb_003964_100 0.0790217842 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
4 Hb_008300_010 0.0843946817 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
5 Hb_001461_010 0.084645085 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
6 Hb_010174_020 0.0891482283 - - protein binding protein, putative [Ricinus communis]
7 Hb_000152_550 0.0924836125 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
8 Hb_009666_040 0.09368253 - - glutathione transferase, putative [Ricinus communis]
9 Hb_007100_030 0.0951362219 - - 40S ribosomal protein S17B [Hevea brasiliensis]
10 Hb_008544_010 0.0954960747 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
11 Hb_004374_140 0.0970379009 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
12 Hb_000046_110 0.0980363107 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
13 Hb_001842_040 0.0981980271 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
14 Hb_001357_080 0.0994386063 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
15 Hb_006117_070 0.1001028971 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
16 Hb_001829_060 0.1035629576 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_001205_150 0.1044754945 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
18 Hb_011537_110 0.1045642117 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
19 Hb_006846_060 0.1046779516 - - inositol hexaphosphate kinase, putative [Ricinus communis]
20 Hb_000479_190 0.1048477435 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_029866_070 Hb_029866_070 Hb_000963_180 Hb_000963_180 Hb_029866_070--Hb_000963_180 Hb_003964_100 Hb_003964_100 Hb_029866_070--Hb_003964_100 Hb_008300_010 Hb_008300_010 Hb_029866_070--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_029866_070--Hb_001461_010 Hb_010174_020 Hb_010174_020 Hb_029866_070--Hb_010174_020 Hb_000152_550 Hb_000152_550 Hb_029866_070--Hb_000152_550 Hb_000023_340 Hb_000023_340 Hb_000963_180--Hb_000023_340 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_000751_130 Hb_000751_130 Hb_003964_100--Hb_000751_130 Hb_006846_060 Hb_006846_060 Hb_003964_100--Hb_006846_060 Hb_024714_010 Hb_024714_010 Hb_003964_100--Hb_024714_010 Hb_004032_100 Hb_004032_100 Hb_003964_100--Hb_004032_100 Hb_003964_100--Hb_001829_060 Hb_001140_060 Hb_001140_060 Hb_008300_010--Hb_001140_060 Hb_009486_130 Hb_009486_130 Hb_008300_010--Hb_009486_130 Hb_000431_010 Hb_000431_010 Hb_008300_010--Hb_000431_010 Hb_006117_070 Hb_006117_070 Hb_008300_010--Hb_006117_070 Hb_000479_010 Hb_000479_010 Hb_008300_010--Hb_000479_010 Hb_008300_010--Hb_010174_020 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_001205_150 Hb_001205_150 Hb_010174_020--Hb_001205_150 Hb_000692_220 Hb_000692_220 Hb_010174_020--Hb_000692_220 Hb_000479_190 Hb_000479_190 Hb_010174_020--Hb_000479_190 Hb_003671_020 Hb_003671_020 Hb_010174_020--Hb_003671_020 Hb_010174_020--Hb_001461_010 Hb_002207_110 Hb_002207_110 Hb_000152_550--Hb_002207_110 Hb_005400_030 Hb_005400_030 Hb_000152_550--Hb_005400_030 Hb_000152_550--Hb_004032_100 Hb_000152_550--Hb_003964_100 Hb_101705_030 Hb_101705_030 Hb_000152_550--Hb_101705_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3875 1.74957 5.52576 13.8504 9.60052 20.8356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8099 27.8701 28.5915 6.79569 7.84492

CAGE analysis