Hb_024714_060

Information

Type -
Description -
Location Contig24714: 30209-33401
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20730g
description POPTRDRAFT_816675; thiamin pyrophosphokinase family protein
nr
ID XP_012082734.1
description PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
swissprot
ID B9DGU7
description Thiamine pyrophosphokinase 1 OS=Arabidopsis thaliana GN=TPK1 PE=2 SV=1
trembl
ID A0A067JVZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13912 PE=4 SV=1
Gene Ontology
ID GO:0004788
description thiamine pyrophosphokinase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25697: 30463-33257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_060 0.0 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
2 Hb_001006_180 0.0775487544 - - PREDICTED: endonuclease V-like [Jatropha curcas]
3 Hb_009265_060 0.0839794631 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
4 Hb_000012_130 0.0849001031 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
5 Hb_001762_060 0.0907323495 - - pantothenate kinase, putative [Ricinus communis]
6 Hb_007594_120 0.0909859647 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
7 Hb_006831_030 0.0917578396 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
8 Hb_003504_020 0.0984534219 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
9 Hb_007382_150 0.1042009636 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
10 Hb_000069_100 0.1081560073 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012573_030 0.1116353917 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001268_080 0.1126522171 - - catalytic, putative [Ricinus communis]
13 Hb_020301_040 0.1130790697 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_000742_270 0.113773728 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
15 Hb_000032_040 0.113927307 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
16 Hb_000975_300 0.1146789974 - - Rab2 [Hevea brasiliensis]
17 Hb_006573_220 0.1148948486 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
18 Hb_000562_040 0.1179822699 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_002876_120 0.1180619366 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
20 Hb_003581_260 0.1192163109 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_024714_060 Hb_024714_060 Hb_001006_180 Hb_001006_180 Hb_024714_060--Hb_001006_180 Hb_009265_060 Hb_009265_060 Hb_024714_060--Hb_009265_060 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030 Hb_001006_180--Hb_001762_060 Hb_012423_050 Hb_012423_050 Hb_001006_180--Hb_012423_050 Hb_001006_180--Hb_006831_030 Hb_000398_160 Hb_000398_160 Hb_001006_180--Hb_000398_160 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030 Hb_012573_030 Hb_012573_030 Hb_009265_060--Hb_012573_030 Hb_004048_050 Hb_004048_050 Hb_009265_060--Hb_004048_050 Hb_171554_080 Hb_171554_080 Hb_009265_060--Hb_171554_080 Hb_000419_040 Hb_000419_040 Hb_009265_060--Hb_000419_040 Hb_009265_060--Hb_001006_180 Hb_001439_170 Hb_001439_170 Hb_000012_130--Hb_001439_170 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030 Hb_000032_040 Hb_000032_040 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_001762_060--Hb_012423_050 Hb_001762_060--Hb_000398_160 Hb_002876_120 Hb_002876_120 Hb_007594_120--Hb_002876_120 Hb_000975_300 Hb_000975_300 Hb_007594_120--Hb_000975_300 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_000062_340 Hb_000062_340 Hb_007594_120--Hb_000062_340 Hb_020301_040 Hb_020301_040 Hb_007594_120--Hb_020301_040 Hb_006831_030--Hb_000069_100 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1709 3.02533 6.41398 7.79017 8.23653 11.2109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.8626 41.9132 52.9054 6.1497 3.55995

CAGE analysis