Hb_002759_230

Information

Type -
Description -
Location Contig2759: 224674-229009
Sequence    

Annotation

kegg
ID cmo:103490745
description vacuolar protein sorting-associated protein 25
nr
ID XP_012092015.1
description PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
swissprot
ID Q8VZC9
description Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1
trembl
ID A0A067JBX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21748 PE=4 SV=1
Gene Ontology
ID GO:0000814
description vacuolar protein sorting-associated protein 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28872: 228732-230506 , PASA_asmbl_28873: 228668-229687 , PASA_asmbl_28874: 229303-229638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_230 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
2 Hb_000188_130 0.0926987344 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
3 Hb_000212_260 0.0927480952 - - acyl-carrier-protein [Triadica sebifera]
4 Hb_002909_060 0.0972895746 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_000099_060 0.0974143257 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
6 Hb_001912_010 0.0999886374 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
7 Hb_003581_090 0.1005910056 - - PREDICTED: galactose oxidase [Jatropha curcas]
8 Hb_000012_130 0.1020877791 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
9 Hb_009404_020 0.1047750766 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001045_080 0.1053730335 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
11 Hb_002053_060 0.1055440405 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
12 Hb_010172_070 0.1057055336 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
13 Hb_007021_020 0.1084154701 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
14 Hb_002027_400 0.1104286709 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
15 Hb_000563_240 0.1112969166 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
16 Hb_000567_170 0.112034252 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
17 Hb_000134_330 0.1134431388 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
18 Hb_002540_030 0.1145760225 - - hypothetical protein 32 [Hevea brasiliensis]
19 Hb_000487_310 0.115363228 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
20 Hb_155764_020 0.1158526436 - - hypothetical protein B456_009G265500 [Gossypium raimondii]

Gene co-expression network

sample Hb_002759_230 Hb_002759_230 Hb_000188_130 Hb_000188_130 Hb_002759_230--Hb_000188_130 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_002909_060 Hb_002909_060 Hb_002759_230--Hb_002909_060 Hb_000099_060 Hb_000099_060 Hb_002759_230--Hb_000099_060 Hb_001912_010 Hb_001912_010 Hb_002759_230--Hb_001912_010 Hb_003581_090 Hb_003581_090 Hb_002759_230--Hb_003581_090 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000045_190 Hb_000045_190 Hb_000188_130--Hb_000045_190 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000188_130--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000188_130--Hb_002529_100 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_002027_400 Hb_002027_400 Hb_002909_060--Hb_002027_400 Hb_002540_030 Hb_002540_030 Hb_002909_060--Hb_002540_030 Hb_002053_060 Hb_002053_060 Hb_002909_060--Hb_002053_060 Hb_002909_060--Hb_001912_010 Hb_010172_070 Hb_010172_070 Hb_002909_060--Hb_010172_070 Hb_000134_330 Hb_000134_330 Hb_000099_060--Hb_000134_330 Hb_002182_060 Hb_002182_060 Hb_000099_060--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_000099_060--Hb_008173_090 Hb_155764_020 Hb_155764_020 Hb_000099_060--Hb_155764_020 Hb_000970_010 Hb_000970_010 Hb_000099_060--Hb_000970_010 Hb_001269_270 Hb_001269_270 Hb_000099_060--Hb_001269_270 Hb_007479_020 Hb_007479_020 Hb_001912_010--Hb_007479_020 Hb_001912_010--Hb_010172_070 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_000329_330 Hb_000329_330 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_092706_020 Hb_092706_020 Hb_003581_090--Hb_092706_020 Hb_002291_030 Hb_002291_030 Hb_003581_090--Hb_002291_030 Hb_003581_090--Hb_002529_100 Hb_000926_290 Hb_000926_290 Hb_003581_090--Hb_000926_290 Hb_001722_040 Hb_001722_040 Hb_003581_090--Hb_001722_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9822 4.33672 3.54583 3.46633 8.27423 7.96463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8744 35.3711 21.698 3.4495 2.48981

CAGE analysis