Hb_001912_010

Information

Type -
Description -
Location Contig1912: 29550-30798
Sequence    

Annotation

kegg
ID pop:POPTR_0003s03400g
description senescence-associated family protein
nr
ID XP_012075308.1
description PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LME7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11883 PE=4 SV=1
Gene Ontology
ID GO:0008270
description senescence-associated family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19067: 29494-30748 , PASA_asmbl_19068: 30752-31094
cDNA
(Sanger)
(ID:Location)		 010_I04.ab1: 29592-30404 , 028_H22.ab1: 29494-30410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001912_010 0.0 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
2 Hb_000212_260 0.0726657285 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_007479_020 0.0734223192 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
4 Hb_010172_070 0.0734796937 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
5 Hb_006573_220 0.0782691872 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_000329_330 0.0790040361 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
7 Hb_003376_030 0.0806604958 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
8 Hb_089140_100 0.0830499089 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
9 Hb_000120_750 0.085874041 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
10 Hb_000905_200 0.0864471307 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
11 Hb_000146_020 0.0865907647 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_007382_150 0.0874454043 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_001687_040 0.0881684552 - - actin-depolymerizing factor [Hevea brasiliensis]
14 Hb_000099_060 0.0892276664 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
15 Hb_002571_020 0.0894080974 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
16 Hb_002027_210 0.0898473951 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
17 Hb_003376_130 0.0899246083 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
18 Hb_044662_070 0.0919172552 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
19 Hb_000922_270 0.0920399307 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
20 Hb_000069_100 0.0951619717 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001912_010 Hb_001912_010 Hb_000212_260 Hb_000212_260 Hb_001912_010--Hb_000212_260 Hb_007479_020 Hb_007479_020 Hb_001912_010--Hb_007479_020 Hb_010172_070 Hb_010172_070 Hb_001912_010--Hb_010172_070 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_000329_330 Hb_000329_330 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_000120_750 Hb_000120_750 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_010172_070--Hb_007479_020 Hb_010172_070--Hb_001722_100 Hb_014720_080 Hb_014720_080 Hb_010172_070--Hb_014720_080 Hb_000922_270 Hb_000922_270 Hb_010172_070--Hb_000922_270 Hb_001257_080 Hb_001257_080 Hb_010172_070--Hb_001257_080 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_000329_330--Hb_003376_130 Hb_000329_330--Hb_000069_100 Hb_148200_010 Hb_148200_010 Hb_000329_330--Hb_148200_010 Hb_000329_330--Hb_003376_030 Hb_000329_330--Hb_002097_060 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_002097_060 Hb_003376_030--Hb_148200_010 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.0937 14.9026 14.7908 28.4993 43.0792 38.1434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.071 111.061 85.4896 19.1326 9.24465

CAGE analysis