Hb_001687_040

Information

Type -
Description -
Location Contig1687: 89952-92928
Sequence    

Annotation

kegg
ID egr:104436438
description actin-depolymerizing factor 2
nr
ID ADI78873.1
description actin-depolymerizing factor [Hevea brasiliensis]
swissprot
ID Q9FVI1
description Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1
trembl
ID D9I9X9
description Actin-depolymerizing factor OS=Hevea brasiliensis GN=ADF PE=2 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15626: 90080-92699 , PASA_asmbl_15627: 91341-92431 , PASA_asmbl_15628: 91341-92687
cDNA
(Sanger)
(ID:Location)		 003_H07.ab1: 90231-92687 , 003_N04.ab1: 90257-92682 , 005_A05.ab1: 90260-92682 , 006_O12.ab1: 90267-92682 , 007_L17.ab1: 90238-92690 , 008_J21.ab1: 90465-92687 , 009_H01.ab1: 90196-92682 , 009_K10.ab1: 90264-92687 , 010_F16.ab1: 90360-92682 , 011_B13.ab1: 90265-92682 , 011_K17.ab1: 90201-92680 , 011_M09.ab1: 90273-92682 , 013_E08.ab1: 90305-92710 , 017_J09.ab1: 90198-92682 , 018_P21.ab1: 90235-92706 , 020_M17.ab1: 90261-92682 , 023_B19.ab1: 90378-92710 , 025_H03.ab1: 90237-92682 , 026_P20.ab1: 90286-92690 , 027_H09.ab1: 90355-92682 , 029_O01.ab1: 90360-92687 , 031_I10.ab1: 90239-92682 , 036_A11.ab1: 90263-92682 , 036_I14.ab1: 90172-92682 , 038_A09.ab1: 90233-92690 , 038_L12.ab1: 90230-92682 , 042_P24.ab1: 90261-92682 , 043_D24.ab1: 90233-92690 , 043_J01.ab1: 90262-92682 , 050_N05.ab1: 90370-92682

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001687_040 0.0 - - actin-depolymerizing factor [Hevea brasiliensis]
2 Hb_006573_220 0.0647211571 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
3 Hb_002097_060 0.0762163758 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_001191_090 0.0798628159 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
5 Hb_000069_100 0.080102876 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000272_070 0.0822335251 - - snare protein YKt [Hevea brasiliensis]
7 Hb_003053_030 0.0827647994 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
8 Hb_000212_260 0.0846145157 - - acyl-carrier-protein [Triadica sebifera]
9 Hb_002431_050 0.0857056821 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
10 Hb_000012_100 0.0871665024 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
11 Hb_000027_150 0.0875810963 - - mitochondrial carrier protein, putative [Ricinus communis]
12 Hb_001912_010 0.0881684552 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
13 Hb_001045_080 0.0890271462 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
14 Hb_000329_330 0.0890802931 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_003376_030 0.0893839484 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
16 Hb_002603_150 0.089469839 - - PREDICTED: protein yippee-like [Jatropha curcas]
17 Hb_000023_340 0.0908710783 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
18 Hb_003125_150 0.0913812695 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
19 Hb_000312_090 0.0925825178 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
20 Hb_002214_050 0.0926216564 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001687_040 Hb_001687_040 Hb_006573_220 Hb_006573_220 Hb_001687_040--Hb_006573_220 Hb_002097_060 Hb_002097_060 Hb_001687_040--Hb_002097_060 Hb_001191_090 Hb_001191_090 Hb_001687_040--Hb_001191_090 Hb_000069_100 Hb_000069_100 Hb_001687_040--Hb_000069_100 Hb_000272_070 Hb_000272_070 Hb_001687_040--Hb_000272_070 Hb_003053_030 Hb_003053_030 Hb_001687_040--Hb_003053_030 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_002097_060--Hb_003376_030 Hb_002097_060--Hb_000069_100 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_148200_010 Hb_148200_010 Hb_002097_060--Hb_148200_010 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_001191_090--Hb_003053_030 Hb_001191_090--Hb_148200_010 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_001191_090--Hb_003376_030 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_000272_070--Hb_006573_220 Hb_000398_160 Hb_000398_160 Hb_000272_070--Hb_000398_160 Hb_000272_070--Hb_000069_100 Hb_003561_030 Hb_003561_030 Hb_000272_070--Hb_003561_030 Hb_003938_180 Hb_003938_180 Hb_000272_070--Hb_003938_180 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
699.371 131.141 277.443 525.599 359.824 625.017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1610.53 1889.9 1242.27 252.392 235.388

CAGE analysis