Hb_003561_030

Information

Type -
Description -
Location Contig3561: 96782-106705
Sequence    

Annotation

kegg
ID vvi:100255501
description uncharacterized LOC100255501
nr
ID XP_012086228.1
description PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
swissprot
ID Q93V66
description Protein FATTY ACID EXPORT 1, chloroplastic OS=Arabidopsis thaliana GN=FAX1 PE=2 SV=1
trembl
ID A0A067JQ60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21129 PE=4 SV=1
Gene Ontology
ID GO:0016020
description transmembrane proteins isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36811: 104472-106706 , PASA_asmbl_36812: 97369-106334 , PASA_asmbl_36813: 101141-101464 , PASA_asmbl_36814: 103507-104436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003561_030 0.0 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
2 Hb_000722_040 0.0631770841 - - -
3 Hb_011161_050 0.0669013834 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
4 Hb_187083_010 0.0697128111 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
5 Hb_000975_110 0.0732061 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
6 Hb_000367_210 0.0806948682 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
7 Hb_000272_070 0.0874040376 - - snare protein YKt [Hevea brasiliensis]
8 Hb_010812_010 0.0907468923 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
9 Hb_002843_210 0.0912067933 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
10 Hb_000163_130 0.0912188824 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
11 Hb_001307_090 0.0939161305 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
12 Hb_004449_200 0.0946230682 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
13 Hb_021409_090 0.0948003638 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
14 Hb_007594_090 0.0957413988 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
15 Hb_000024_030 0.0979846699 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
16 Hb_004041_040 0.0981634446 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
17 Hb_000122_020 0.1024318687 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
18 Hb_000224_120 0.1028283375 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
19 Hb_002631_020 0.1037283943 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
20 Hb_004336_050 0.1038212764 - - hypothetical protein JCGZ_26651 [Jatropha curcas]

Gene co-expression network

sample Hb_003561_030 Hb_003561_030 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_011161_050 Hb_011161_050 Hb_003561_030--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_000975_110 Hb_000975_110 Hb_003561_030--Hb_000975_110 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_000722_040--Hb_000975_110 Hb_000224_090 Hb_000224_090 Hb_000722_040--Hb_000224_090 Hb_000024_030 Hb_000024_030 Hb_000722_040--Hb_000024_030 Hb_001427_230 Hb_001427_230 Hb_000722_040--Hb_001427_230 Hb_000722_040--Hb_011161_050 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_011161_050--Hb_000975_110 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_187083_010--Hb_000367_210 Hb_000236_460 Hb_000236_460 Hb_187083_010--Hb_000236_460 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_187083_010--Hb_011161_050 Hb_000975_110--Hb_000024_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_000820_130 Hb_000820_130 Hb_000367_210--Hb_000820_130 Hb_005914_200 Hb_005914_200 Hb_000367_210--Hb_005914_200 Hb_006573_220 Hb_006573_220 Hb_000272_070--Hb_006573_220 Hb_001687_040 Hb_001687_040 Hb_000272_070--Hb_001687_040 Hb_000398_160 Hb_000398_160 Hb_000272_070--Hb_000398_160 Hb_000069_100 Hb_000069_100 Hb_000272_070--Hb_000069_100 Hb_003938_180 Hb_003938_180 Hb_000272_070--Hb_003938_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.39515 1.47562 1.69749 9.87693 4.93315 12.4636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7907 28.7003 17.1854 6.0848 1.84188

CAGE analysis