Hb_000236_460

Information

Type -
Description -
Location Contig236: 359053-361132
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G058100g
description hypothetical protein
nr
ID XP_012071057.1
description PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID V7BNN4
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G058100g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24727: 358751-361137
cDNA
(Sanger)
(ID:Location)		 007_K23.ab1: 358868-361137 , 010_H22.ab1: 358896-361136 , 015_M03.ab1: 358751-361128

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_460 0.0 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
2 Hb_003549_020 0.0757297289 - - conserved hypothetical protein [Ricinus communis]
3 Hb_187083_010 0.0831262934 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
4 Hb_021409_090 0.0856254225 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
5 Hb_097007_010 0.085781671 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
6 Hb_000085_330 0.0903794215 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
7 Hb_001123_120 0.0912103038 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
8 Hb_000199_070 0.0964791356 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002835_320 0.0972687477 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_002320_060 0.0979917612 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
11 Hb_000645_190 0.1003478257 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
12 Hb_008847_020 0.1033297537 - - 40S ribosomal protein S17C [Hevea brasiliensis]
13 Hb_000163_130 0.1035546697 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
14 Hb_000212_470 0.1054224043 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
15 Hb_026398_010 0.1066072779 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
16 Hb_011161_050 0.1074488585 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
17 Hb_003638_080 0.1092682179 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
18 Hb_003058_220 0.1105899026 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
19 Hb_000367_210 0.1112451043 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
20 Hb_000963_030 0.1138890282 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_460 Hb_000236_460 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_000645_190 Hb_000645_190 Hb_003549_020--Hb_000645_190 Hb_003549_020--Hb_097007_010 Hb_002320_060 Hb_002320_060 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_000367_210 Hb_000367_210 Hb_187083_010--Hb_000367_210 Hb_003561_030 Hb_003561_030 Hb_187083_010--Hb_003561_030 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050 Hb_002217_450 Hb_002217_450 Hb_021409_090--Hb_002217_450 Hb_000199_070 Hb_000199_070 Hb_021409_090--Hb_000199_070 Hb_021409_090--Hb_011161_050 Hb_021409_090--Hb_003561_030 Hb_097007_010--Hb_002320_060 Hb_026398_010 Hb_026398_010 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_097007_010--Hb_000085_330 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_148930_010 Hb_148930_010 Hb_000085_330--Hb_148930_010 Hb_000085_330--Hb_001123_120 Hb_183086_040 Hb_183086_040 Hb_000085_330--Hb_183086_040 Hb_000085_330--Hb_000645_190 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.0331 15.3146 17.5358 59.0757 53.3221 115.774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
192.099 401.356 112.568 47.962 10.0245

CAGE analysis