Hb_002320_060

Information

Type -
Description -
Location Contig2320: 55414-56504
Sequence    

Annotation

kegg
ID crb:CARUB_v10018269mg
description hypothetical protein
nr
ID XP_006292074.1
description hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
swissprot
ID Q9M2F1
description 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2
trembl
ID R0FQY1
description 40S ribosomal protein S27 (Fragment) OS=Capsella rubella GN=CARUB_v10018269mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s27-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24399: 54912-56571 , PASA_asmbl_24400: 55700-55929
cDNA
(Sanger)
(ID:Location)		 012_A04.ab1: 55253-56565 , 014_K18.ab1: 55274-56571 , 036_J22.ab1: 55266-56568 , 039_P24.ab1: 55581-60490 , 044_N05.ab1: 55350-56571 , 045_C02.ab1: 55271-56571 , 046_C13.ab1: 55255-56571 , 048_P06.ab1: 55255-56571 , 053_A10.ab1: 55423-56550 , 053_E18.ab1: 55264-56571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_060 0.0 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
2 Hb_097007_010 0.0899625859 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
3 Hb_003549_020 0.0961213983 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000236_460 0.0979917612 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
5 Hb_187083_010 0.0995825319 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
6 Hb_000645_190 0.1054139084 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
7 Hb_030565_040 0.1083510006 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_021409_090 0.1123843582 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
9 Hb_000085_330 0.1140633197 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
10 Hb_001863_400 0.1151325042 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
11 Hb_000395_240 0.1151826973 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
12 Hb_003058_220 0.1215259195 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
13 Hb_000163_130 0.1229015874 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
14 Hb_004007_180 0.1235153448 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
15 Hb_000367_210 0.123593313 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
16 Hb_000028_400 0.1261314139 - - Protein SSU72, putative [Ricinus communis]
17 Hb_007520_060 0.1282034624 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
18 Hb_002217_450 0.1293477044 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
19 Hb_001780_050 0.1297313865 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
20 Hb_000199_070 0.1299007034 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002320_060 Hb_002320_060 Hb_097007_010 Hb_097007_010 Hb_002320_060--Hb_097007_010 Hb_003549_020 Hb_003549_020 Hb_002320_060--Hb_003549_020 Hb_000236_460 Hb_000236_460 Hb_002320_060--Hb_000236_460 Hb_187083_010 Hb_187083_010 Hb_002320_060--Hb_187083_010 Hb_000645_190 Hb_000645_190 Hb_002320_060--Hb_000645_190 Hb_030565_040 Hb_030565_040 Hb_002320_060--Hb_030565_040 Hb_097007_010--Hb_000236_460 Hb_097007_010--Hb_003549_020 Hb_026398_010 Hb_026398_010 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_000085_330 Hb_000085_330 Hb_097007_010--Hb_000085_330 Hb_003549_020--Hb_000236_460 Hb_003549_020--Hb_000645_190 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_000367_210 Hb_000367_210 Hb_187083_010--Hb_000367_210 Hb_003561_030 Hb_003561_030 Hb_187083_010--Hb_003561_030 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000645_190--Hb_000085_330 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_004333_030 Hb_004333_030 Hb_030565_040--Hb_004333_030 Hb_007520_060 Hb_007520_060 Hb_030565_040--Hb_007520_060 Hb_000318_490 Hb_000318_490 Hb_030565_040--Hb_000318_490 Hb_030565_040--Hb_187083_010 Hb_030565_040--Hb_000236_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
248.842 176.417 101.729 355.891 219.783 812.509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1150.05 2469.85 878.281 164.601 137.075

CAGE analysis