Hb_030565_040

Information

Type -
Description -
Location Contig30565: 37051-38906
Sequence    

Annotation

kegg
ID rcu:RCOM_0523760
description glycine-rich RNA-binding protein, putative
nr
ID XP_002522811.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9SVM8
description Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1
trembl
ID B9S9Z2
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0523760 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32268: 37135-38971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_040 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_004333_030 0.1044798989 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
3 Hb_007520_060 0.1081427776 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
4 Hb_002320_060 0.1083510006 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
5 Hb_000318_490 0.1130400979 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
6 Hb_187083_010 0.1174083067 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
7 Hb_000236_460 0.1208139858 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
8 Hb_000123_160 0.1285436749 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_003549_020 0.129504672 - - conserved hypothetical protein [Ricinus communis]
10 Hb_097007_010 0.1376944565 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
11 Hb_000085_330 0.1388020753 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
12 Hb_000367_210 0.1403123252 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
13 Hb_004324_150 0.1404220822 - - -
14 Hb_003349_070 0.1410007359 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
15 Hb_000819_070 0.1420396192 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
16 Hb_000613_170 0.1423645951 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
17 Hb_021409_090 0.1425207802 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
18 Hb_008748_020 0.1437946751 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
19 Hb_001587_060 0.1441637325 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004223_260 0.1445019541 - - hypothetical protein F383_09277 [Gossypium arboreum]

Gene co-expression network

sample Hb_030565_040 Hb_030565_040 Hb_004333_030 Hb_004333_030 Hb_030565_040--Hb_004333_030 Hb_007520_060 Hb_007520_060 Hb_030565_040--Hb_007520_060 Hb_002320_060 Hb_002320_060 Hb_030565_040--Hb_002320_060 Hb_000318_490 Hb_000318_490 Hb_030565_040--Hb_000318_490 Hb_187083_010 Hb_187083_010 Hb_030565_040--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_030565_040--Hb_000236_460 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_004333_030--Hb_000318_490 Hb_000896_120 Hb_000896_120 Hb_004333_030--Hb_000896_120 Hb_004333_030--Hb_187083_010 Hb_000106_100 Hb_000106_100 Hb_004333_030--Hb_000106_100 Hb_009659_020 Hb_009659_020 Hb_007520_060--Hb_009659_020 Hb_006541_020 Hb_006541_020 Hb_007520_060--Hb_006541_020 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130 Hb_097007_010 Hb_097007_010 Hb_002320_060--Hb_097007_010 Hb_003549_020 Hb_003549_020 Hb_002320_060--Hb_003549_020 Hb_002320_060--Hb_000236_460 Hb_002320_060--Hb_187083_010 Hb_000645_190 Hb_000645_190 Hb_002320_060--Hb_000645_190 Hb_000123_160 Hb_000123_160 Hb_000318_490--Hb_000123_160 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_000976_250 Hb_000976_250 Hb_000318_490--Hb_000976_250 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_187083_010--Hb_000367_210 Hb_003561_030 Hb_003561_030 Hb_187083_010--Hb_003561_030 Hb_187083_010--Hb_000236_460 Hb_000163_130 Hb_000163_130 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_011161_050 Hb_011161_050 Hb_187083_010--Hb_011161_050 Hb_000236_460--Hb_003549_020 Hb_000236_460--Hb_021409_090 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18536 3.68602 1.57571 13.5708 9.30853 31.7152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7229 120.025 43.6002 12.1067 1.63123

CAGE analysis