Hb_000106_100

Information

Type -
Description -
Location Contig106: 144189-144970
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_100 0.0 - - -
2 Hb_000215_180 0.0982730128 - - hypothetical protein 17 [Hevea brasiliensis]
3 Hb_003349_070 0.1020763773 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
4 Hb_004223_260 0.1052160056 - - hypothetical protein F383_09277 [Gossypium arboreum]
5 Hb_000780_210 0.1164778016 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_001623_430 0.1166130025 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
7 Hb_183086_040 0.1167162042 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
8 Hb_000819_070 0.1226767422 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
9 Hb_004333_030 0.1249240023 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
10 Hb_030954_020 0.1309365539 - - hypothetical protein RCOM_1330200 [Ricinus communis]
11 Hb_001377_380 0.1320486639 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
12 Hb_009838_040 0.1340551013 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
13 Hb_000922_100 0.1349978707 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
14 Hb_000635_080 0.1381794373 - - 60S ribosomal protein L17A [Hevea brasiliensis]
15 Hb_080477_060 0.1385786578 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000318_490 0.1419570063 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
17 Hb_000896_120 0.1455324059 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
18 Hb_003211_050 0.1516741794 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
19 Hb_004545_130 0.1521857468 - - uncharacterized protein LOC100305465 [Glycine max]
20 Hb_004635_060 0.1525871393 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]

Gene co-expression network

sample Hb_000106_100 Hb_000106_100 Hb_000215_180 Hb_000215_180 Hb_000106_100--Hb_000215_180 Hb_003349_070 Hb_003349_070 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000780_210 Hb_000780_210 Hb_000106_100--Hb_000780_210 Hb_001623_430 Hb_001623_430 Hb_000106_100--Hb_001623_430 Hb_183086_040 Hb_183086_040 Hb_000106_100--Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_003349_070--Hb_001623_430 Hb_003349_070--Hb_004223_260 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_003349_070--Hb_183086_040 Hb_004223_260--Hb_000819_070 Hb_004223_260--Hb_000780_210 Hb_006718_010 Hb_006718_010 Hb_004223_260--Hb_006718_010 Hb_004223_260--Hb_001623_430 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_001623_430--Hb_183086_040 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_001623_430--Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_183086_040--Hb_000896_120 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15145 0.528077 0 1.52576 1.15585 3.05875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9172 18.2435 7.58403 3.70524 0.46394

CAGE analysis