Hb_003349_070

Information

Type -
Description -
Location Contig3349: 102975-110867
Sequence    

Annotation

kegg
ID gmx:100526909
description uncharacterized LOC100526909
nr
ID XP_012478350.1
description PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
swissprot
ID O04421
description Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2
trembl
ID A0A0B0P7V3
description Signal recognition particle 14 kDa-like protein OS=Gossypium arboreum GN=F383_25723 PE=4 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 14 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_070 0.0 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
2 Hb_001623_430 0.0938667828 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
3 Hb_004223_260 0.0989922374 - - hypothetical protein F383_09277 [Gossypium arboreum]
4 Hb_000106_100 0.1020763773 - - -
5 Hb_000819_070 0.102603015 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
6 Hb_000085_330 0.1102811817 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
7 Hb_183086_040 0.1146124568 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
8 Hb_000780_210 0.1155177437 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
9 Hb_034585_050 0.120895588 - - -
10 Hb_001123_120 0.121214556 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
11 Hb_030954_020 0.1230005635 - - hypothetical protein RCOM_1330200 [Ricinus communis]
12 Hb_000684_160 0.1252745558 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
13 Hb_007520_060 0.1268034152 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
14 Hb_004474_010 0.1299281237 - - unnamed protein product [Coffea canephora]
15 Hb_000922_100 0.1309996029 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
16 Hb_009659_020 0.1316564758 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
17 Hb_002260_020 0.1320566002 - - -
18 Hb_080477_060 0.1334275948 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004041_040 0.1348698547 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
20 Hb_000215_180 0.1354316156 - - hypothetical protein 17 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003349_070 Hb_003349_070 Hb_001623_430 Hb_001623_430 Hb_003349_070--Hb_001623_430 Hb_004223_260 Hb_004223_260 Hb_003349_070--Hb_004223_260 Hb_000106_100 Hb_000106_100 Hb_003349_070--Hb_000106_100 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_183086_040 Hb_183086_040 Hb_003349_070--Hb_183086_040 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_004223_260--Hb_000819_070 Hb_004223_260--Hb_000106_100 Hb_004223_260--Hb_000780_210 Hb_006718_010 Hb_006718_010 Hb_004223_260--Hb_006718_010 Hb_004223_260--Hb_001623_430 Hb_000215_180 Hb_000215_180 Hb_000106_100--Hb_000215_180 Hb_000106_100--Hb_000780_210 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040 Hb_000617_110 Hb_000617_110 Hb_000819_070--Hb_000617_110 Hb_001369_400 Hb_001369_400 Hb_000819_070--Hb_001369_400 Hb_000819_070--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_000819_070--Hb_000635_080 Hb_000163_130 Hb_000163_130 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_148930_010 Hb_148930_010 Hb_000085_330--Hb_148930_010 Hb_001123_120 Hb_001123_120 Hb_000085_330--Hb_001123_120 Hb_000085_330--Hb_183086_040 Hb_000645_190 Hb_000645_190 Hb_000085_330--Hb_000645_190 Hb_183086_040--Hb_000922_100 Hb_183086_040--Hb_000780_210 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_183086_040--Hb_000215_180 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8902 2.54794 2.16853 5.77488 11.7958 34.3713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.9295 122.14 44.0603 20.9187 5.44563

CAGE analysis