Hb_011161_050

Information

Type -
Description -
Location Contig11161: 32906-34758
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08670g
description POPTRDRAFT_816293; hypothetical protein
nr
ID XP_011027578.1
description PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PBS5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08670g PE=2 SV=1
Gene Ontology
ID GO:0008168
description histone-lysine n-methyltransferase suv420h14-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03523: 32893-35104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_050 0.0 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
2 Hb_010812_010 0.0617389913 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
3 Hb_000975_110 0.0664040634 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
4 Hb_003561_030 0.0669013834 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
5 Hb_000364_020 0.0685651438 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
6 Hb_000199_070 0.0721654893 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000086_550 0.0755408999 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_000024_030 0.0770456881 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
9 Hb_001433_050 0.0778219484 - - 60S ribosomal protein L18, putative [Ricinus communis]
10 Hb_002835_320 0.0783290106 - - 60S ribosomal protein L27B [Hevea brasiliensis]
11 Hb_001085_010 0.083172324 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
12 Hb_000163_130 0.0833969663 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
13 Hb_000283_110 0.0855446832 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
14 Hb_003226_210 0.0860122074 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
15 Hb_010172_030 0.0869658459 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
16 Hb_187083_010 0.087225427 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
17 Hb_009554_010 0.0874812677 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
18 Hb_000722_040 0.0898394186 - - -
19 Hb_130291_010 0.0911756016 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
20 Hb_010810_020 0.0924168663 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]

Gene co-expression network

sample Hb_011161_050 Hb_011161_050 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_000024_030 Hb_000024_030 Hb_010812_010--Hb_000024_030 Hb_001433_050 Hb_001433_050 Hb_010812_010--Hb_001433_050 Hb_010812_010--Hb_000975_110 Hb_010812_010--Hb_000364_020 Hb_000751_130 Hb_000751_130 Hb_010812_010--Hb_000751_130 Hb_000975_110--Hb_000024_030 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_000975_110--Hb_001433_050 Hb_003561_030--Hb_000722_040 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_000364_020--Hb_000086_550 Hb_000283_110 Hb_000283_110 Hb_000364_020--Hb_000283_110 Hb_004336_050 Hb_004336_050 Hb_000364_020--Hb_004336_050 Hb_000364_020--Hb_000975_110 Hb_000364_020--Hb_000751_130 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_002701_050 Hb_002701_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5795 4.05268 4.79481 18.8196 13.6058 30.1281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2641 64.6397 28.1928 12.55 5.96192

CAGE analysis