Hb_000419_130

Information

Type -
Description -
Location Contig419: 152942-153226
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03970g
description hypothetical protein
nr
ID XP_012093252.1
description PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41398: 152948-153253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_130 0.0 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
2 Hb_001769_100 0.0767175757 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
3 Hb_001610_130 0.0865274063 - - 40S ribosomal protein S30 [Medicago truncatula]
4 Hb_003058_220 0.0981790744 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
5 Hb_011161_050 0.1063796019 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
6 Hb_001085_010 0.1064237835 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
7 Hb_000199_070 0.1086594247 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000645_190 0.1100662974 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
9 Hb_187083_010 0.1110901567 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
10 Hb_042710_010 0.1134852304 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_007520_060 0.1198014075 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
12 Hb_007594_090 0.1218542996 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_140543_010 0.1237179457 - - -
14 Hb_000364_020 0.1260478334 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
15 Hb_008847_020 0.1265296599 - - 40S ribosomal protein S17C [Hevea brasiliensis]
16 Hb_009659_020 0.1274157281 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
17 Hb_010812_010 0.1283834074 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_172706_030 0.1300781593 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
19 Hb_000367_210 0.130224212 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
20 Hb_014834_030 0.1305918678 - - -

Gene co-expression network

sample Hb_000419_130 Hb_000419_130 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_001610_130 Hb_001610_130 Hb_000419_130--Hb_001610_130 Hb_003058_220 Hb_003058_220 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070 Hb_000645_190 Hb_000645_190 Hb_001769_100--Hb_000645_190 Hb_012265_010 Hb_012265_010 Hb_001769_100--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001769_100--Hb_003623_050 Hb_001769_100--Hb_011161_050 Hb_001950_120 Hb_001950_120 Hb_001769_100--Hb_001950_120 Hb_001575_030 Hb_001575_030 Hb_001610_130--Hb_001575_030 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_003226_220 Hb_003226_220 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140 Hb_003058_220--Hb_000199_070 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_003058_220--Hb_000645_190 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_001085_010--Hb_011161_050 Hb_000820_130 Hb_000820_130 Hb_001085_010--Hb_000820_130 Hb_001085_010--Hb_003561_030 Hb_001085_010--Hb_000364_020 Hb_000212_470 Hb_000212_470 Hb_001085_010--Hb_000212_470 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5662 13.6712 13.0522 76.0774 37.2031 202.019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
231.359 327.552 92.8083 56.5861 27.2597

CAGE analysis