Hb_001950_120

Information

Type -
Description -
Location Contig1950: 124432-128678
Sequence    

Annotation

kegg
ID rcu:RCOM_1153850
description heavy metal cation transport atpase, putative (EC:3.6.3.5)
nr
ID XP_012079313.1
description PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
swissprot
ID Q9M3H5
description Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=2 SV=2
trembl
ID A0A067KAF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12459 PE=3 SV=1
Gene Ontology
ID GO:0005488
description probable cadmium zinc-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_120 0.0 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
2 Hb_001769_100 0.1075992255 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
3 Hb_012265_010 0.11831869 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
4 Hb_003623_050 0.1306340932 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000449_040 0.1311816387 - - protein with unknown function [Ricinus communis]
6 Hb_000645_190 0.1359822413 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
7 Hb_008318_010 0.1381902704 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
8 Hb_001009_300 0.1400554228 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
9 Hb_130291_010 0.1447556011 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
10 Hb_008847_020 0.1464701814 - - 40S ribosomal protein S17C [Hevea brasiliensis]
11 Hb_000085_330 0.1471866224 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
12 Hb_001700_020 0.1500716339 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
13 Hb_026048_070 0.1510361699 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
14 Hb_116349_170 0.1521728411 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
15 Hb_000483_250 0.1531918213 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
16 Hb_002781_020 0.154120449 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
17 Hb_000580_080 0.154350614 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
18 Hb_000419_130 0.1546574804 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
19 Hb_000120_590 0.1579105996 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
20 Hb_003086_100 0.1597954974 - - hypothetical protein JCGZ_08729 [Jatropha curcas]

Gene co-expression network

sample Hb_001950_120 Hb_001950_120 Hb_001769_100 Hb_001769_100 Hb_001950_120--Hb_001769_100 Hb_012265_010 Hb_012265_010 Hb_001950_120--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001950_120--Hb_003623_050 Hb_000449_040 Hb_000449_040 Hb_001950_120--Hb_000449_040 Hb_000645_190 Hb_000645_190 Hb_001950_120--Hb_000645_190 Hb_008318_010 Hb_008318_010 Hb_001950_120--Hb_008318_010 Hb_000419_130 Hb_000419_130 Hb_001769_100--Hb_000419_130 Hb_001769_100--Hb_000645_190 Hb_001769_100--Hb_012265_010 Hb_001769_100--Hb_003623_050 Hb_011161_050 Hb_011161_050 Hb_001769_100--Hb_011161_050 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_001433_050 Hb_001433_050 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_000136_170 Hb_000136_170 Hb_003623_050--Hb_000136_170 Hb_005357_130 Hb_005357_130 Hb_003623_050--Hb_005357_130 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_000086_550 Hb_000086_550 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_116349_170 Hb_116349_170 Hb_000449_040--Hb_116349_170 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000487_320 Hb_000487_320 Hb_000449_040--Hb_000487_320 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000134_020 Hb_000134_020 Hb_000449_040--Hb_000134_020 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000645_190--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_003683_080 Hb_003683_080 Hb_008318_010--Hb_003683_080 Hb_000317_410 Hb_000317_410 Hb_008318_010--Hb_000317_410 Hb_021056_020 Hb_021056_020 Hb_008318_010--Hb_021056_020 Hb_000010_260 Hb_000010_260 Hb_008318_010--Hb_000010_260 Hb_008695_040 Hb_008695_040 Hb_008318_010--Hb_008695_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17714 0.390374 0.257884 0.369244 0.902873 3.31443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69806 5.99471 1.41284 2.24679 0.967588

CAGE analysis