Hb_000487_320

Information

Type -
Description -
Location Contig487: 272975-278711
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003039mg
description hypothetical protein
nr
ID XP_012087415.1
description PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K005
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22654 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atpase family aaa domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_320 0.0 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
2 Hb_001552_080 0.1094159425 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004005_010 0.1140286154 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
4 Hb_000449_040 0.1155464259 - - protein with unknown function [Ricinus communis]
5 Hb_001053_160 0.1265873776 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
6 Hb_000134_020 0.1266537956 - - thioredoxin-like family protein [Hevea brasiliensis]
7 Hb_000645_190 0.1269941236 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
8 Hb_000580_080 0.1276311248 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
9 Hb_002234_210 0.1285999135 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
10 Hb_009252_130 0.1289975681 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
11 Hb_155764_020 0.1310397638 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
12 Hb_000526_040 0.1321380814 - - 60S ribosomal protein L6, putative [Ricinus communis]
13 Hb_011310_060 0.1335066725 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
14 Hb_001268_140 0.1348985018 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004958_050 0.1363930487 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_000545_150 0.1369803549 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
17 Hb_005496_030 0.1378297269 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
18 Hb_005590_020 0.1379428634 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
19 Hb_000970_010 0.138653239 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
20 Hb_005701_020 0.1395885915 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_320 Hb_000487_320 Hb_001552_080 Hb_001552_080 Hb_000487_320--Hb_001552_080 Hb_004005_010 Hb_004005_010 Hb_000487_320--Hb_004005_010 Hb_000449_040 Hb_000449_040 Hb_000487_320--Hb_000449_040 Hb_001053_160 Hb_001053_160 Hb_000487_320--Hb_001053_160 Hb_000134_020 Hb_000134_020 Hb_000487_320--Hb_000134_020 Hb_000645_190 Hb_000645_190 Hb_000487_320--Hb_000645_190 Hb_001552_080--Hb_004005_010 Hb_011311_010 Hb_011311_010 Hb_001552_080--Hb_011311_010 Hb_172221_010 Hb_172221_010 Hb_001552_080--Hb_172221_010 Hb_026398_010 Hb_026398_010 Hb_001552_080--Hb_026398_010 Hb_000963_030 Hb_000963_030 Hb_001552_080--Hb_000963_030 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_001269_270 Hb_001269_270 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020 Hb_116349_170 Hb_116349_170 Hb_000449_040--Hb_116349_170 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000449_040--Hb_000134_020 Hb_003638_080 Hb_003638_080 Hb_001053_160--Hb_003638_080 Hb_005224_050 Hb_005224_050 Hb_001053_160--Hb_005224_050 Hb_005496_030 Hb_005496_030 Hb_001053_160--Hb_005496_030 Hb_001053_160--Hb_000134_020 Hb_003058_220 Hb_003058_220 Hb_001053_160--Hb_003058_220 Hb_000134_020--Hb_000645_190 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_000134_020--Hb_003058_220 Hb_000134_020--Hb_003638_080 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_000645_190--Hb_003058_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14296 0.29639 0.208647 0.125638 0.462439 1.34402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43349 3.44344 0.783002 0.50922 0.247994

CAGE analysis