Hb_005496_030

Information

Type -
Description -
Location Contig5496: 35278-36632
Sequence    

Annotation

kegg
ID mdm:103452813
description 40S ribosomal protein S29-like
nr
ID XP_008390572.1
description PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
swissprot
ID Q5I7K3
description 40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=1 SV=1
trembl
ID A0A0E0MMU2
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48203: 35242-36684 , PASA_asmbl_48204: 35436-35895
cDNA
(Sanger)
(ID:Location)		 003_J07.ab1: 35242-36678 , 004_J06.ab1: 35242-36638 , 007_C18.ab1: 35242-36629 , 016_F11.ab1: 35253-36628 , 019_A13.ab1: 35242-36628 , 025_B11.ab1: 35242-36606 , 030_D07.ab1: 35253-36625 , 030_H13.ab1: 35242-36678 , 032_M16.ab1: 35242-36678 , 037_J24.ab1: 35242-36648 , 038_D22.ab1: 35253-36628 , 040_A08.ab1: 35253-36628 , 040_I17.ab1: 35253-36628 , 043_M21.ab1: 35242-36628 , 051_F16.ab1: 35294-36628

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_030 0.0 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
2 Hb_000526_040 0.0533075498 - - 60S ribosomal protein L6, putative [Ricinus communis]
3 Hb_000545_150 0.0772861616 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_001638_260 0.0778989763 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
5 Hb_001247_350 0.0783094908 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
6 Hb_002716_090 0.085972005 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
7 Hb_000617_090 0.0878812962 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
8 Hb_001314_100 0.0883472263 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
9 Hb_012573_070 0.091876909 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000526_150 0.0945182473 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
11 Hb_001269_270 0.0958379157 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_003641_020 0.0969579026 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
13 Hb_001818_020 0.0978172442 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
14 Hb_000487_250 0.0984357672 - - 60S ribosomal protein L27e, putative [Ricinus communis]
15 Hb_009554_010 0.1001530209 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
16 Hb_000970_010 0.101520918 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
17 Hb_007741_050 0.1015324025 - - vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_003927_140 0.1031531866 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_000948_210 0.1045413886 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
20 Hb_000086_070 0.1045752665 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_005496_030 Hb_005496_030 Hb_000526_040 Hb_000526_040 Hb_005496_030--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_005496_030--Hb_000545_150 Hb_001638_260 Hb_001638_260 Hb_005496_030--Hb_001638_260 Hb_001247_350 Hb_001247_350 Hb_005496_030--Hb_001247_350 Hb_002716_090 Hb_002716_090 Hb_005496_030--Hb_002716_090 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090 Hb_000526_040--Hb_000545_150 Hb_000526_040--Hb_001247_350 Hb_000526_040--Hb_001638_260 Hb_012573_070 Hb_012573_070 Hb_000526_040--Hb_012573_070 Hb_002660_030 Hb_002660_030 Hb_000526_040--Hb_002660_030 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000545_150--Hb_001638_260 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_001638_260--Hb_001818_020 Hb_001247_350--Hb_002716_090 Hb_001247_350--Hb_000545_150 Hb_000948_190 Hb_000948_190 Hb_001247_350--Hb_000948_190 Hb_001247_350--Hb_032202_090 Hb_002716_090--Hb_001638_260 Hb_003927_140 Hb_003927_140 Hb_002716_090--Hb_003927_140 Hb_002716_090--Hb_009554_010 Hb_001214_140 Hb_001214_140 Hb_002716_090--Hb_001214_140 Hb_000312_090 Hb_000312_090 Hb_000617_090--Hb_000312_090 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000617_090--Hb_003125_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
314.522 68.0402 144.017 164.88 194.743 401.096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
394.715 918.537 299.702 130.035 40.8675

CAGE analysis