Hb_000948_190

Information

Type transcription factor
Description TF Family: GNAT
Location Contig948: 192285-192758
Sequence    

Annotation

kegg
ID rcu:RCOM_0517100
description Glucosamine 6-phosphate N-acetyltransferase, putative (EC:2.3.1.4)
nr
ID XP_002528747.1
description Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
swissprot
ID Q9LFU9
description Glucosamine 6-phosphate N-acetyltransferase OS=Arabidopsis thaliana GN=GNA1 PE=1 SV=1
trembl
ID B9SRX8
description Glucosamine 6-phosphate N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_0517100 PE=4 SV=1
Gene Ontology
ID GO:0004343
description glucosamine 6-phosphate n-acetyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_190 0.0 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
2 Hb_001247_350 0.0908932169 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
3 Hb_007432_080 0.1084329872 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
4 Hb_003919_010 0.109066882 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_168054_010 0.1134825968 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
6 Hb_000975_250 0.1153676838 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
7 Hb_004502_020 0.1182115327 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
8 Hb_000152_550 0.1246958319 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
9 Hb_005496_030 0.1283216327 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
10 Hb_001133_020 0.1290318033 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
11 Hb_000684_230 0.1299753321 - - 40S ribosomal protein S23, putative [Ricinus communis]
12 Hb_003058_220 0.1309449364 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
13 Hb_004306_020 0.1317877849 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
14 Hb_010180_020 0.1320847325 - - hypothetical protein glysoja_030394 [Glycine soja]
15 Hb_001314_100 0.1332919919 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
16 Hb_007441_270 0.1338611591 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
17 Hb_000526_040 0.1349366685 - - 60S ribosomal protein L6, putative [Ricinus communis]
18 Hb_000094_020 0.1380943082 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
19 Hb_001369_660 0.1383814858 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
20 Hb_002716_090 0.1397619506 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000948_190 Hb_000948_190 Hb_001247_350 Hb_001247_350 Hb_000948_190--Hb_001247_350 Hb_007432_080 Hb_007432_080 Hb_000948_190--Hb_007432_080 Hb_003919_010 Hb_003919_010 Hb_000948_190--Hb_003919_010 Hb_168054_010 Hb_168054_010 Hb_000948_190--Hb_168054_010 Hb_000975_250 Hb_000975_250 Hb_000948_190--Hb_000975_250 Hb_004502_020 Hb_004502_020 Hb_000948_190--Hb_004502_020 Hb_002716_090 Hb_002716_090 Hb_001247_350--Hb_002716_090 Hb_005496_030 Hb_005496_030 Hb_001247_350--Hb_005496_030 Hb_000526_040 Hb_000526_040 Hb_001247_350--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_001247_350--Hb_000545_150 Hb_032202_090 Hb_032202_090 Hb_001247_350--Hb_032202_090 Hb_000163_160 Hb_000163_160 Hb_007432_080--Hb_000163_160 Hb_010180_020 Hb_010180_020 Hb_007432_080--Hb_010180_020 Hb_001279_310 Hb_001279_310 Hb_007432_080--Hb_001279_310 Hb_001279_070 Hb_001279_070 Hb_007432_080--Hb_001279_070 Hb_004306_020 Hb_004306_020 Hb_007432_080--Hb_004306_020 Hb_007432_080--Hb_168054_010 Hb_000684_230 Hb_000684_230 Hb_003919_010--Hb_000684_230 Hb_000771_100 Hb_000771_100 Hb_003919_010--Hb_000771_100 Hb_023226_010 Hb_023226_010 Hb_003919_010--Hb_023226_010 Hb_000080_060 Hb_000080_060 Hb_003919_010--Hb_000080_060 Hb_000144_090 Hb_000144_090 Hb_003919_010--Hb_000144_090 Hb_168054_010--Hb_010180_020 Hb_001369_660 Hb_001369_660 Hb_168054_010--Hb_001369_660 Hb_001314_100 Hb_001314_100 Hb_168054_010--Hb_001314_100 Hb_001604_080 Hb_001604_080 Hb_168054_010--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_168054_010--Hb_003687_110 Hb_165132_010 Hb_165132_010 Hb_168054_010--Hb_165132_010 Hb_001080_080 Hb_001080_080 Hb_000975_250--Hb_001080_080 Hb_003607_170 Hb_003607_170 Hb_000975_250--Hb_003607_170 Hb_126216_010 Hb_126216_010 Hb_000975_250--Hb_126216_010 Hb_000617_090 Hb_000617_090 Hb_000975_250--Hb_000617_090 Hb_144598_020 Hb_144598_020 Hb_000975_250--Hb_144598_020 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_031089_040 Hb_031089_040 Hb_004502_020--Hb_031089_040 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_000003_730 Hb_000003_730 Hb_004502_020--Hb_000003_730 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_004502_020--Hb_032202_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7298 2.33917 9.41232 10.5169 6.46811 29.1206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9283 32.1582 13.3189 3.66136 1.91521

CAGE analysis