Hb_000526_040

Information

Type -
Description -
Location Contig526: 36005-37799
Sequence    

Annotation

kegg
ID rcu:RCOM_0647900
description 60S ribosomal protein L6, putative
nr
ID XP_002524802.1
description 60S ribosomal protein L6, putative [Ricinus communis]
swissprot
ID P34091
description 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1
trembl
ID B9SFN3
description 60S ribosomal protein L6 OS=Ricinus communis GN=RCOM_0647900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46989: 36033-37797
cDNA
(Sanger)
(ID:Location)		 016_K17.ab1: 36050-37492 , 029_F22.ab1: 36050-37188 , 030_D11.ab1: 36050-37272 , 042_N19.ab1: 36033-37565

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000526_040 0.0 - - 60S ribosomal protein L6, putative [Ricinus communis]
2 Hb_005496_030 0.0533075498 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
3 Hb_000545_150 0.0773071876 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_001247_350 0.0784361371 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
5 Hb_001638_260 0.0808911335 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
6 Hb_012573_070 0.0809633785 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002660_030 0.0827561611 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009554_010 0.0832285441 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
9 Hb_001314_100 0.0840264403 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
10 Hb_002701_050 0.087926749 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
11 Hb_003226_210 0.088350182 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
12 Hb_001505_020 0.0884495014 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
13 Hb_011311_010 0.0888272614 - - 60S ribosomal protein L27C [Hevea brasiliensis]
14 Hb_001214_160 0.0898744774 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_003203_040 0.0902837653 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
16 Hb_000580_080 0.0914127304 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
17 Hb_001818_020 0.0915758502 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
18 Hb_011628_040 0.0917071772 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
19 Hb_003734_140 0.0932164194 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002716_090 0.094554373 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000526_040 Hb_000526_040 Hb_005496_030 Hb_005496_030 Hb_000526_040--Hb_005496_030 Hb_000545_150 Hb_000545_150 Hb_000526_040--Hb_000545_150 Hb_001247_350 Hb_001247_350 Hb_000526_040--Hb_001247_350 Hb_001638_260 Hb_001638_260 Hb_000526_040--Hb_001638_260 Hb_012573_070 Hb_012573_070 Hb_000526_040--Hb_012573_070 Hb_002660_030 Hb_002660_030 Hb_000526_040--Hb_002660_030 Hb_005496_030--Hb_000545_150 Hb_005496_030--Hb_001638_260 Hb_005496_030--Hb_001247_350 Hb_002716_090 Hb_002716_090 Hb_005496_030--Hb_002716_090 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000545_150--Hb_001638_260 Hb_001247_350--Hb_002716_090 Hb_001247_350--Hb_000545_150 Hb_000948_190 Hb_000948_190 Hb_001247_350--Hb_000948_190 Hb_001247_350--Hb_032202_090 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_001638_260--Hb_001818_020 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_002713_070 Hb_002713_070 Hb_002660_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002660_030--Hb_011311_010 Hb_003226_210 Hb_003226_210 Hb_002660_030--Hb_003226_210 Hb_000134_070 Hb_000134_070 Hb_002660_030--Hb_000134_070 Hb_026398_010 Hb_026398_010 Hb_002660_030--Hb_026398_010 Hb_002925_030 Hb_002925_030 Hb_002660_030--Hb_002925_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
257.812 86.9895 150.834 150.908 200.819 441.758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
402.587 933.424 311.638 179.266 69.7946

CAGE analysis