Hb_003919_010

Information

Type -
Description -
Location Contig3919: 18107-22514
Sequence    

Annotation

kegg
ID egr:104436793
description peptidyl-tRNA hydrolase, mitochondrial-like
nr
ID XP_012067081.1
description PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q6NLS8
description Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1
trembl
ID A0A067L0Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01880 PE=3 SV=1
Gene Ontology
ID GO:0016787
description peptidyl-trna mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003919_010 0.0 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000948_190 0.109066882 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
3 Hb_000684_230 0.1105736867 - - 40S ribosomal protein S23, putative [Ricinus communis]
4 Hb_000771_100 0.1134499351 - - Os06g0527300 [Oryza sativa Japonica Group]
5 Hb_023226_010 0.1135669892 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
6 Hb_000080_060 0.1176492562 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
7 Hb_000144_090 0.1258553878 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
8 Hb_007317_060 0.1271683283 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
9 Hb_000155_180 0.1298928144 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
10 Hb_155375_010 0.1301400149 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
11 Hb_000620_080 0.132025257 - - hypothetical protein F775_32679 [Aegilops tauschii]
12 Hb_000103_140 0.1326186613 - - ribosomal protein S3a [Populus trichocarpa]
13 Hb_007432_080 0.1329729023 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
14 Hb_136731_010 0.133743812 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
15 Hb_001133_020 0.1337844736 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
16 Hb_009543_030 0.1351414694 - - prefoldin subunit 1 [Jatropha curcas]
17 Hb_004306_020 0.1360241815 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
18 Hb_010180_020 0.1361028769 - - hypothetical protein glysoja_030394 [Glycine soja]
19 Hb_001377_180 0.1364404574 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
20 Hb_006909_030 0.139138935 - - 40S ribosomal protein S17B [Hevea brasiliensis]

Gene co-expression network

sample Hb_003919_010 Hb_003919_010 Hb_000948_190 Hb_000948_190 Hb_003919_010--Hb_000948_190 Hb_000684_230 Hb_000684_230 Hb_003919_010--Hb_000684_230 Hb_000771_100 Hb_000771_100 Hb_003919_010--Hb_000771_100 Hb_023226_010 Hb_023226_010 Hb_003919_010--Hb_023226_010 Hb_000080_060 Hb_000080_060 Hb_003919_010--Hb_000080_060 Hb_000144_090 Hb_000144_090 Hb_003919_010--Hb_000144_090 Hb_001247_350 Hb_001247_350 Hb_000948_190--Hb_001247_350 Hb_007432_080 Hb_007432_080 Hb_000948_190--Hb_007432_080 Hb_168054_010 Hb_168054_010 Hb_000948_190--Hb_168054_010 Hb_000975_250 Hb_000975_250 Hb_000948_190--Hb_000975_250 Hb_004502_020 Hb_004502_020 Hb_000948_190--Hb_004502_020 Hb_008173_120 Hb_008173_120 Hb_000684_230--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_007317_060 Hb_007317_060 Hb_000684_230--Hb_007317_060 Hb_000103_140 Hb_000103_140 Hb_000684_230--Hb_000103_140 Hb_002272_260 Hb_002272_260 Hb_000771_100--Hb_002272_260 Hb_000155_180 Hb_000155_180 Hb_000771_100--Hb_000155_180 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_086703_010 Hb_086703_010 Hb_000771_100--Hb_086703_010 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290 Hb_023226_010--Hb_000144_090 Hb_001133_020 Hb_001133_020 Hb_023226_010--Hb_001133_020 Hb_011161_040 Hb_011161_040 Hb_023226_010--Hb_011161_040 Hb_023226_010--Hb_008173_120 Hb_000032_540 Hb_000032_540 Hb_023226_010--Hb_000032_540 Hb_000048_050 Hb_000048_050 Hb_023226_010--Hb_000048_050 Hb_004545_060 Hb_004545_060 Hb_000080_060--Hb_004545_060 Hb_010180_010 Hb_010180_010 Hb_000080_060--Hb_010180_010 Hb_004944_010 Hb_004944_010 Hb_000080_060--Hb_004944_010 Hb_143398_010 Hb_143398_010 Hb_000080_060--Hb_143398_010 Hb_012008_020 Hb_012008_020 Hb_000080_060--Hb_012008_020 Hb_000045_090 Hb_000045_090 Hb_000080_060--Hb_000045_090 Hb_000144_090--Hb_011161_040 Hb_000144_090--Hb_008173_120 Hb_000144_090--Hb_000032_540 Hb_000144_090--Hb_007193_100 Hb_000144_090--Hb_007317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3112 2.23282 6.6311 17.007 10.3395 45.6993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3508 31.3825 17.0752 4.43338 2.86736

CAGE analysis