Hb_023226_010

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig23226: 10522-25666
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10080g
description CCAAT-binding transcription factor family protein
nr
ID XP_012075621.1
description PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
swissprot
ID Q84JP1
description Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1
trembl
ID A0A067KSV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09222 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-7-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24410: 10540-25491 , PASA_asmbl_24411: 11025-11404 , PASA_asmbl_24413: 15551-15703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_010 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
2 Hb_000144_090 0.0782412496 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
3 Hb_001133_020 0.0896570075 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
4 Hb_011161_040 0.1008322376 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
5 Hb_008173_120 0.101012123 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000032_540 0.102596 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
7 Hb_000048_050 0.1026760697 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
8 Hb_004453_150 0.1081373009 - - BnaC02g13240D [Brassica napus]
9 Hb_007317_060 0.1108850952 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
10 Hb_003919_010 0.1135669892 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_015057_010 0.1159819747 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
12 Hb_002259_030 0.1171604168 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000087_020 0.1183132478 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
14 Hb_018133_060 0.1195716502 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
15 Hb_004724_100 0.1207396832 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
16 Hb_002259_150 0.1208907587 - - BnaC04g40780D [Brassica napus]
17 Hb_000684_230 0.1217623245 - - 40S ribosomal protein S23, putative [Ricinus communis]
18 Hb_084849_020 0.1225253436 - - ARF GTPase activator, putative [Ricinus communis]
19 Hb_000274_020 0.1236015981 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
20 Hb_000771_100 0.1246353619 - - Os06g0527300 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_023226_010 Hb_023226_010 Hb_000144_090 Hb_000144_090 Hb_023226_010--Hb_000144_090 Hb_001133_020 Hb_001133_020 Hb_023226_010--Hb_001133_020 Hb_011161_040 Hb_011161_040 Hb_023226_010--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_023226_010--Hb_008173_120 Hb_000032_540 Hb_000032_540 Hb_023226_010--Hb_000032_540 Hb_000048_050 Hb_000048_050 Hb_023226_010--Hb_000048_050 Hb_000144_090--Hb_011161_040 Hb_000144_090--Hb_008173_120 Hb_000144_090--Hb_000032_540 Hb_007193_100 Hb_007193_100 Hb_000144_090--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_000144_090--Hb_007317_060 Hb_018133_060 Hb_018133_060 Hb_001133_020--Hb_018133_060 Hb_001133_020--Hb_011161_040 Hb_000086_070 Hb_000086_070 Hb_001133_020--Hb_000086_070 Hb_000087_020 Hb_000087_020 Hb_001133_020--Hb_000087_020 Hb_084849_020 Hb_084849_020 Hb_001133_020--Hb_084849_020 Hb_004453_150 Hb_004453_150 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011161_040--Hb_000152_430 Hb_000684_230 Hb_000684_230 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_008173_120--Hb_007193_100 Hb_008173_120--Hb_007317_060 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_000103_140 Hb_000103_140 Hb_008173_120--Hb_000103_140 Hb_002259_030 Hb_002259_030 Hb_000032_540--Hb_002259_030 Hb_000189_530 Hb_000189_530 Hb_000032_540--Hb_000189_530 Hb_000032_540--Hb_011161_040 Hb_000175_400 Hb_000175_400 Hb_000032_540--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_000032_540--Hb_011016_090 Hb_001473_130 Hb_001473_130 Hb_000048_050--Hb_001473_130 Hb_002352_010 Hb_002352_010 Hb_000048_050--Hb_002352_010 Hb_000048_050--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_000048_050--Hb_001369_050 Hb_002025_320 Hb_002025_320 Hb_000048_050--Hb_002025_320 Hb_004899_320 Hb_004899_320 Hb_000048_050--Hb_004899_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.1107 9.10876 8.13406 19.0982 17.4249 95.0612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.9407 73.4336 47.9132 12.218 9.40861

CAGE analysis