Hb_002259_030

Information

Type -
Description -
Location Contig2259: 15358-17237
Sequence    

Annotation

kegg
ID rcu:RCOM_0613720
description hypothetical protein
nr
ID XP_002528536.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRB7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23456: 15665-17233
cDNA
(Sanger)
(ID:Location)		 002_C21.ab1: 15731-17233 , 003_J06.ab1: 15723-17233 , 012_P16.ab1: 15781-17233 , 022_K22.ab1: 15798-17229 , 052_L16.ab1: 15757-17203

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000032_540 0.0718408361 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
3 Hb_000175_400 0.0877508624 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011016_090 0.0951110235 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
5 Hb_004453_150 0.0978548694 - - BnaC02g13240D [Brassica napus]
6 Hb_000156_130 0.0998124286 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
7 Hb_001454_140 0.1000656559 - - protein arginine n-methyltransferase, putative [Ricinus communis]
8 Hb_001243_050 0.1046073149 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
9 Hb_011161_040 0.1049433537 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
10 Hb_000189_530 0.1072088775 - - 40S ribosomal protein S24B [Hevea brasiliensis]
11 Hb_000510_090 0.1075340328 - - 40S ribosomal protein S15 [Morus notabilis]
12 Hb_000442_160 0.1077999083 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
13 Hb_000089_130 0.1084890522 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
14 Hb_006447_010 0.1086942382 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
15 Hb_015057_010 0.1090881032 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
16 Hb_001246_100 0.1093484642 - - Ras-related small GTP-binding family protein [Theobroma cacao]
17 Hb_004374_200 0.1107486987 - - putative GMP synthase [Oxybasis rubra]
18 Hb_001019_090 0.1123308159 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_118977_020 0.1125680498 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
20 Hb_002025_320 0.1133916367 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]

Gene co-expression network

sample Hb_002259_030 Hb_002259_030 Hb_000032_540 Hb_000032_540 Hb_002259_030--Hb_000032_540 Hb_000175_400 Hb_000175_400 Hb_002259_030--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_002259_030--Hb_011016_090 Hb_004453_150 Hb_004453_150 Hb_002259_030--Hb_004453_150 Hb_000156_130 Hb_000156_130 Hb_002259_030--Hb_000156_130 Hb_001454_140 Hb_001454_140 Hb_002259_030--Hb_001454_140 Hb_000189_530 Hb_000189_530 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000032_540--Hb_000175_400 Hb_000032_540--Hb_011016_090 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090 Hb_000193_350 Hb_000193_350 Hb_000175_400--Hb_000193_350 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_011016_090--Hb_000189_530 Hb_011016_090--Hb_000193_350 Hb_011016_090--Hb_004453_150 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_004453_150--Hb_011161_040 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_002307_030 Hb_002307_030 Hb_000156_130--Hb_002307_030 Hb_002374_160 Hb_002374_160 Hb_000156_130--Hb_002374_160 Hb_143813_010 Hb_143813_010 Hb_000156_130--Hb_143813_010 Hb_002374_490 Hb_002374_490 Hb_000156_130--Hb_002374_490 Hb_001477_130 Hb_001477_130 Hb_000156_130--Hb_001477_130 Hb_000156_130--Hb_001454_140 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_001454_140--Hb_002374_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.305 62.0775 12.8294 39.8617 118.451 332.014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
211.188 226.284 150.119 45.243 14.3231

CAGE analysis