Hb_011016_090

Information

Type -
Description -
Location Contig11016: 54438-64575
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06120g
description POPTRDRAFT_831091; hypothetical protein
nr
ID XP_011010919.1
description PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
swissprot
ID Q9CQ06
description 39S ribosomal protein L24, mitochondrial OS=Mus musculus GN=Mrpl24 PE=2 SV=1
trembl
ID B9H2D5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06120g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03119: 54377-64488 , PASA_asmbl_03120: 63997-64503
cDNA
(Sanger)
(ID:Location)		 018_L08.ab1: 64007-64503

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011016_090 0.0 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
2 Hb_000189_530 0.088741874 - - 40S ribosomal protein S24B [Hevea brasiliensis]
3 Hb_000175_400 0.0924639966 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000193_350 0.0948611183 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
5 Hb_002259_030 0.0951110235 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004453_150 0.0968188154 - - BnaC02g13240D [Brassica napus]
7 Hb_000032_540 0.0983702274 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
8 Hb_004117_180 0.1038262802 - - -
9 Hb_011174_010 0.1100276275 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
10 Hb_102156_010 0.110566416 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000366_100 0.111094133 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
12 Hb_000617_320 0.1130195093 - - 40S ribosomal protein S21B [Hevea brasiliensis]
13 Hb_011161_040 0.115189448 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_002272_260 0.1165683256 - - -
15 Hb_025193_050 0.1169368116 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
16 Hb_008016_010 0.1180276187 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
17 Hb_001437_040 0.1202914644 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
18 Hb_003453_010 0.1218154606 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000329_770 0.121958116 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015057_010 0.1239087057 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]

Gene co-expression network

sample Hb_011016_090 Hb_011016_090 Hb_000189_530 Hb_000189_530 Hb_011016_090--Hb_000189_530 Hb_000175_400 Hb_000175_400 Hb_011016_090--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_011016_090--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_011016_090--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000189_530--Hb_000193_350 Hb_000175_400--Hb_000193_350 Hb_000175_400--Hb_002259_030 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_002259_030--Hb_000032_540 Hb_002259_030--Hb_004453_150 Hb_000156_130 Hb_000156_130 Hb_002259_030--Hb_000156_130 Hb_001454_140 Hb_001454_140 Hb_002259_030--Hb_001454_140 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_000032_540--Hb_000189_530 Hb_000032_540--Hb_011161_040 Hb_000032_540--Hb_000175_400 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.2734 11.9431 7.92909 16.5129 48.7852 150.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.9887 89.1501 37.8642 11.5275 6.00738

CAGE analysis