Hb_000366_100

Information

Type -
Description -
Location Contig366: 99263-101080
Sequence    

Annotation

kegg
ID rcu:RCOM_0222550
description ribosomal protein l7ae, putative
nr
ID ADR71289.1
description 60S ribosomal protein L7aA [Hevea brasiliensis]
swissprot
ID Q5XH16
description NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1
trembl
ID I3NMQ2
description 60S ribosomal protein L7aA OS=Hevea brasiliensis GN=RPL7aA PE=2 SV=1
Gene Ontology
ID GO:0005730
description nhp2-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37678: 99267-100970
cDNA
(Sanger)
(ID:Location)		 007_K04.ab1: 99284-100970 , 014_E11.ab1: 99293-100970 , 028_F01.ab1: 99288-100970 , 028_G21.ab1: 99318-100970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000366_100 0.0 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
2 Hb_000189_530 0.0849459678 - - 40S ribosomal protein S24B [Hevea brasiliensis]
3 Hb_036369_010 0.0884491328 - - -
4 Hb_023675_010 0.0919839176 - - -
5 Hb_000752_060 0.0955768138 - - expressed protein, putative [Ricinus communis]
6 Hb_000617_320 0.0967258699 - - 40S ribosomal protein S21B [Hevea brasiliensis]
7 Hb_008016_010 0.0982763143 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
8 Hb_001019_090 0.1066562961 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
9 Hb_001437_040 0.1076918361 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
10 Hb_007632_250 0.1080050675 - - conserved hypothetical protein [Ricinus communis]
11 Hb_170305_020 0.1096411444 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
12 Hb_011016_090 0.111094133 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
13 Hb_007992_030 0.1123438866 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
14 Hb_007166_050 0.1151569579 - - -
15 Hb_007625_020 0.1151933641 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
16 Hb_004545_160 0.1196740485 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
17 Hb_000933_140 0.1198410295 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
18 Hb_119583_010 0.121515051 - - 60S ribosomal protein L12A [Hevea brasiliensis]
19 Hb_017895_050 0.123160908 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
20 Hb_033448_010 0.1234268099 - - hypothetical protein JCGZ_19772 [Jatropha curcas]

Gene co-expression network

sample Hb_000366_100 Hb_000366_100 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000617_320 Hb_000617_320 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000189_530--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350 Hb_001248_020 Hb_001248_020 Hb_036369_010--Hb_001248_020 Hb_036369_010--Hb_023675_010 Hb_170305_020 Hb_170305_020 Hb_036369_010--Hb_170305_020 Hb_003398_060 Hb_003398_060 Hb_036369_010--Hb_003398_060 Hb_025246_010 Hb_025246_010 Hb_036369_010--Hb_025246_010 Hb_004852_020 Hb_004852_020 Hb_023675_010--Hb_004852_020 Hb_077562_040 Hb_077562_040 Hb_023675_010--Hb_077562_040 Hb_023675_010--Hb_001248_020 Hb_012395_100 Hb_012395_100 Hb_023675_010--Hb_012395_100 Hb_001437_040 Hb_001437_040 Hb_000752_060--Hb_001437_040 Hb_000752_060--Hb_007166_050 Hb_007992_030 Hb_007992_030 Hb_000752_060--Hb_007992_030 Hb_000752_060--Hb_000617_320 Hb_000752_060--Hb_001019_090 Hb_000617_320--Hb_007166_050 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_008016_010--Hb_000189_530 Hb_098709_010 Hb_098709_010 Hb_008016_010--Hb_098709_010 Hb_005348_080 Hb_005348_080 Hb_008016_010--Hb_005348_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
784.931 99.0245 42.4557 101.276 701.235 1221.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
883.292 1124.88 283.457 133.191 34.3157

CAGE analysis