Hb_005348_080

Information

Type -
Description -
Location Contig5348: 66773-77143
Sequence    

Annotation

kegg
ID rcu:RCOM_0710770
description nucleolysin tia-1, putative
nr
ID XP_012077083.1
description PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
swissprot
ID Q9M427
description Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia GN=UBP1 PE=2 SV=1
trembl
ID A0A067KCI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07512 PE=4 SV=1
Gene Ontology
ID GO:0000166
description oligouridylate-binding protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_080 0.0 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
2 Hb_000831_060 0.0909981797 - - 17.5 kd heat shock family protein [Populus trichocarpa]
3 Hb_008016_010 0.098762039 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
4 Hb_000291_200 0.1125161199 - - -
5 Hb_073973_110 0.1126567441 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
6 Hb_001804_040 0.114144445 - - conserved hypothetical protein [Ricinus communis]
7 Hb_098709_010 0.1169423326 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
8 Hb_000152_430 0.1174428344 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
9 Hb_001104_120 0.1174562444 - - -
10 Hb_001366_230 0.1175299922 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001220_040 0.1202495108 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
12 Hb_000252_040 0.1211394018 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
13 Hb_002662_100 0.121382126 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
14 Hb_007317_220 0.1222784548 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
15 Hb_003125_040 0.1225896972 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
16 Hb_000089_130 0.1281206529 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
17 Hb_001191_100 0.1287628652 - - F-actin capping protein beta subunit [Populus trichocarpa]
18 Hb_001019_090 0.1300075035 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_180992_010 0.1304167257 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
20 Hb_017895_050 0.1316370705 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005348_080 Hb_005348_080 Hb_000831_060 Hb_000831_060 Hb_005348_080--Hb_000831_060 Hb_008016_010 Hb_008016_010 Hb_005348_080--Hb_008016_010 Hb_000291_200 Hb_000291_200 Hb_005348_080--Hb_000291_200 Hb_073973_110 Hb_073973_110 Hb_005348_080--Hb_073973_110 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_098709_010 Hb_098709_010 Hb_005348_080--Hb_098709_010 Hb_000089_130 Hb_000089_130 Hb_000831_060--Hb_000089_130 Hb_000831_060--Hb_073973_110 Hb_009026_050 Hb_009026_050 Hb_000831_060--Hb_009026_050 Hb_000831_060--Hb_008016_010 Hb_000563_590 Hb_000563_590 Hb_000831_060--Hb_000563_590 Hb_001437_040 Hb_001437_040 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_000252_040 Hb_000252_040 Hb_000291_200--Hb_000252_040 Hb_002662_100 Hb_002662_100 Hb_000291_200--Hb_002662_100 Hb_102864_010 Hb_102864_010 Hb_000291_200--Hb_102864_010 Hb_001366_230 Hb_001366_230 Hb_000291_200--Hb_001366_230 Hb_000291_200--Hb_008016_010 Hb_073973_110--Hb_000089_130 Hb_073973_110--Hb_000563_590 Hb_001104_120 Hb_001104_120 Hb_073973_110--Hb_001104_120 Hb_001454_330 Hb_001454_330 Hb_073973_110--Hb_001454_330 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001804_040--Hb_001366_230 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_098709_010--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8475 2.52075 1.75722 2.80347 31.7219 28.0623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8233 31.4064 17.8802 3.25571 1.49104

CAGE analysis