Hb_073973_110

Information

Type -
Description -
Location Contig73973: 93668-94615
Sequence    

Annotation

kegg
ID rcu:RCOM_0716680
description hypothetical protein
nr
ID XP_012078200.1
description PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1
Gene Ontology
ID GO:0003899
description krueppel-like factor 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_110 0.0 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
2 Hb_000831_060 0.0932287016 - - 17.5 kd heat shock family protein [Populus trichocarpa]
3 Hb_005348_080 0.1126567441 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
4 Hb_000089_130 0.1212758054 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
5 Hb_000563_590 0.1217045869 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
6 Hb_001104_120 0.1227274448 - - -
7 Hb_001454_330 0.1227458928 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
8 Hb_004545_160 0.1251492718 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_000193_230 0.1253617849 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
10 Hb_000061_160 0.1257822224 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
11 Hb_009026_050 0.1303288047 - - vacuolar ATPase F subunit [Hevea brasiliensis]
12 Hb_036369_010 0.1303469681 - - -
13 Hb_000366_100 0.1310885712 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
14 Hb_007451_030 0.1317246979 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
15 Hb_012305_060 0.1323849522 - - protein translocase, putative [Ricinus communis]
16 Hb_001804_040 0.1348948586 - - conserved hypothetical protein [Ricinus communis]
17 Hb_170305_020 0.1352262301 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
18 Hb_027472_090 0.136599244 - - -
19 Hb_180992_010 0.1373242996 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
20 Hb_004295_020 0.1382673111 - - thioredoxin II-type 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_073973_110 Hb_073973_110 Hb_000831_060 Hb_000831_060 Hb_073973_110--Hb_000831_060 Hb_005348_080 Hb_005348_080 Hb_073973_110--Hb_005348_080 Hb_000089_130 Hb_000089_130 Hb_073973_110--Hb_000089_130 Hb_000563_590 Hb_000563_590 Hb_073973_110--Hb_000563_590 Hb_001104_120 Hb_001104_120 Hb_073973_110--Hb_001104_120 Hb_001454_330 Hb_001454_330 Hb_073973_110--Hb_001454_330 Hb_000831_060--Hb_000089_130 Hb_000831_060--Hb_005348_080 Hb_009026_050 Hb_009026_050 Hb_000831_060--Hb_009026_050 Hb_008016_010 Hb_008016_010 Hb_000831_060--Hb_008016_010 Hb_000831_060--Hb_000563_590 Hb_005348_080--Hb_008016_010 Hb_000291_200 Hb_000291_200 Hb_005348_080--Hb_000291_200 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_098709_010 Hb_098709_010 Hb_005348_080--Hb_098709_010 Hb_000089_130--Hb_001454_330 Hb_000089_130--Hb_009026_050 Hb_000089_130--Hb_000563_590 Hb_011139_020 Hb_011139_020 Hb_000089_130--Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090 Hb_000563_590--Hb_001454_330 Hb_000563_590--Hb_001104_120 Hb_000563_590--Hb_011139_020 Hb_001621_180 Hb_001621_180 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_001104_120--Hb_007441_180 Hb_001104_120--Hb_001804_040 Hb_001104_120--Hb_001621_180 Hb_001104_120--Hb_001454_330 Hb_000417_110 Hb_000417_110 Hb_001454_330--Hb_000417_110 Hb_001454_330--Hb_011139_020 Hb_001951_110 Hb_001951_110 Hb_001454_330--Hb_001951_110 Hb_001454_330--Hb_001804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.47707 1.82906 0.811281 0.413745 11.9834 12.6566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0453 18.536 6.49288 1.52444 0

CAGE analysis