Hb_008016_010

Information

Type -
Description -
Location Contig8016: 7219-9376
Sequence    

Annotation

kegg
ID rcu:RCOM_0664840
description hypothetical protein
nr
ID XP_012089727.1
description PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LZX1
description Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1
trembl
ID B9T6F6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58820: 7214-9245
cDNA
(Sanger)
(ID:Location)		 018_G08.ab1: 7372-9242 , 019_O18.ab1: 7392-9245 , 037_I11.ab1: 7408-24343

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008016_010 0.0 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
2 Hb_001437_040 0.0818836502 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
3 Hb_000933_140 0.0857685898 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
4 Hb_000189_530 0.0890290641 - - 40S ribosomal protein S24B [Hevea brasiliensis]
5 Hb_098709_010 0.0897012772 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
6 Hb_000366_100 0.0982763143 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
7 Hb_005348_080 0.098762039 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
8 Hb_001019_090 0.0998877845 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
9 Hb_008408_030 0.1023103787 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_007166_050 0.1061712608 - - -
11 Hb_118977_020 0.106541799 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
12 Hb_003453_010 0.1069593263 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011161_040 0.107400627 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_004102_190 0.107418649 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
15 Hb_000752_060 0.1075591297 - - expressed protein, putative [Ricinus communis]
16 Hb_000152_430 0.1092972036 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
17 Hb_007317_220 0.1097729807 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
18 Hb_000831_060 0.1136146642 - - 17.5 kd heat shock family protein [Populus trichocarpa]
19 Hb_006569_020 0.1164475226 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
20 Hb_000365_360 0.1176511388 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008016_010 Hb_008016_010 Hb_001437_040 Hb_001437_040 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_098709_010 Hb_098709_010 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_005348_080 Hb_005348_080 Hb_008016_010--Hb_005348_080 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_026048_090 Hb_026048_090 Hb_000933_140--Hb_026048_090 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_002518_250 Hb_002518_250 Hb_000933_140--Hb_002518_250 Hb_000933_140--Hb_098709_010 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_000189_530--Hb_007166_050 Hb_000193_350 Hb_000193_350 Hb_000189_530--Hb_000193_350 Hb_000365_360 Hb_000365_360 Hb_098709_010--Hb_000365_360 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_033491_010 Hb_033491_010 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090 Hb_036369_010 Hb_036369_010 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000366_100--Hb_000617_320 Hb_000831_060 Hb_000831_060 Hb_005348_080--Hb_000831_060 Hb_000291_200 Hb_000291_200 Hb_005348_080--Hb_000291_200 Hb_073973_110 Hb_073973_110 Hb_005348_080--Hb_073973_110 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_005348_080--Hb_098709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
274.514 20.752 15.1804 70.5352 312.311 441.96
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
374.032 357.452 200.459 45.3074 17.3687

CAGE analysis