Hb_000831_060

Information

Type -
Description -
Location Contig831: 129517-130167
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13740g
description POPTRDRAFT_826045; 17.5 kd heat shock family protein
nr
ID XP_002324683.1
description 17.5 kd heat shock family protein [Populus trichocarpa]
swissprot
ID P05478
description 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1
trembl
ID B9IN54
description 17.5 kd heat shock family protein OS=Populus trichocarpa GN=POPTR_0018s13740g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59823: 129546-130390
cDNA
(Sanger)
(ID:Location)		 001_F06.ab1: 129655-130358 , 003_I17.ab1: 129611-130323 , 004_F12.ab1: 129632-130358 , 004_P11.ab1: 129632-130333 , 005_O24.ab1: 129656-130194 , 008_E02.ab1: 129657-130257 , 009_C21.ab1: 129652-130390 , 013_H09.ab1: 129651-130344 , 015_P12.ab1: 129546-130195 , 017_A02.ab1: 129546-130191 , 017_K08.ab1: 129629-130294 , 017_P14.ab1: 129546-130283 , 019_E08.ab1: 129657-130207 , 027_K13.ab1: 129546-130235 , 030_K01.ab1: 129632-130269 , 031_A02.ab1: 129670-130340 , 032_H20.ab1: 129546-130255 , 034_G23.ab1: 129652-130351 , 037_F07.ab1: 129652-130349 , 039_O03.ab1: 129591-129837 , 042_H12.ab1: 129546-130210 , 045_F18.ab1: 129611-130340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000831_060 0.0 - - 17.5 kd heat shock family protein [Populus trichocarpa]
2 Hb_000089_130 0.0879574263 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
3 Hb_005348_080 0.0909981797 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
4 Hb_073973_110 0.0932287016 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
5 Hb_009026_050 0.0938055922 - - vacuolar ATPase F subunit [Hevea brasiliensis]
6 Hb_008016_010 0.1136146642 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
7 Hb_000563_590 0.1165529253 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
8 Hb_000152_430 0.1169801431 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
9 Hb_001454_330 0.118847879 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
10 Hb_019762_010 0.1200806788 - - hypothetical protein JCGZ_12062 [Jatropha curcas]
11 Hb_025087_010 0.1206342072 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
12 Hb_002662_100 0.1208418329 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
13 Hb_000175_400 0.1219944227 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005000_290 0.1237416745 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
15 Hb_001019_090 0.1238709018 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_001366_230 0.12493135 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000313_380 0.1249542207 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000193_230 0.1249915598 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
19 Hb_001104_120 0.12601783 - - -
20 Hb_006787_040 0.1263860246 - - polyadenylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000831_060 Hb_000831_060 Hb_000089_130 Hb_000089_130 Hb_000831_060--Hb_000089_130 Hb_005348_080 Hb_005348_080 Hb_000831_060--Hb_005348_080 Hb_073973_110 Hb_073973_110 Hb_000831_060--Hb_073973_110 Hb_009026_050 Hb_009026_050 Hb_000831_060--Hb_009026_050 Hb_008016_010 Hb_008016_010 Hb_000831_060--Hb_008016_010 Hb_000563_590 Hb_000563_590 Hb_000831_060--Hb_000563_590 Hb_001454_330 Hb_001454_330 Hb_000089_130--Hb_001454_330 Hb_000089_130--Hb_009026_050 Hb_000089_130--Hb_000563_590 Hb_011139_020 Hb_011139_020 Hb_000089_130--Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090 Hb_005348_080--Hb_008016_010 Hb_000291_200 Hb_000291_200 Hb_005348_080--Hb_000291_200 Hb_005348_080--Hb_073973_110 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_098709_010 Hb_098709_010 Hb_005348_080--Hb_098709_010 Hb_073973_110--Hb_000089_130 Hb_073973_110--Hb_000563_590 Hb_001104_120 Hb_001104_120 Hb_073973_110--Hb_001104_120 Hb_073973_110--Hb_001454_330 Hb_025087_010 Hb_025087_010 Hb_009026_050--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_009026_050--Hb_001366_230 Hb_000313_380 Hb_000313_380 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_183963_020 Hb_183963_020 Hb_009026_050--Hb_183963_020 Hb_001437_040 Hb_001437_040 Hb_008016_010--Hb_001437_040 Hb_000933_140 Hb_000933_140 Hb_008016_010--Hb_000933_140 Hb_000189_530 Hb_000189_530 Hb_008016_010--Hb_000189_530 Hb_008016_010--Hb_098709_010 Hb_000366_100 Hb_000366_100 Hb_008016_010--Hb_000366_100 Hb_000563_590--Hb_001454_330 Hb_000563_590--Hb_001104_120 Hb_000563_590--Hb_011139_020 Hb_001621_180 Hb_001621_180 Hb_000563_590--Hb_001621_180 Hb_000563_590--Hb_183963_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2930.84 883.46 162.936 431.944 4171.8 5899.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5444 6719.5 3712.27 578.157 111.526

CAGE analysis