Hb_025087_010

Information

Type -
Description -
Location Contig25087: 18830-19879
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10720g
description POPTRDRAFT_578661; zinc finger family protein
nr
ID XP_012077491.1
description PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
swissprot
ID Q9ZV51
description RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1
trembl
ID A0A067KDU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07823 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26217: 18641-19466
cDNA
(Sanger)
(ID:Location)		 003_F02.ab1: 18689-19382 , 022_A09.ab1: 18641-19132 , 022_M20.ab1: 18683-19317 , 024_O20.ab1: 18641-19392 , 025_N14.ab1: 18643-19436

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025087_010 0.0 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
2 Hb_183963_020 0.0581526738 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
3 Hb_001366_230 0.06959112 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008695_190 0.0737896815 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
5 Hb_009026_050 0.0754854236 - - vacuolar ATPase F subunit [Hevea brasiliensis]
6 Hb_001722_040 0.0774459327 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_005000_290 0.0856729214 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
8 Hb_000085_300 0.0890054347 - - -
9 Hb_001366_220 0.089740501 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007229_060 0.0941245061 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
11 Hb_001191_100 0.0945990146 - - F-actin capping protein beta subunit [Populus trichocarpa]
12 Hb_005618_040 0.0954759329 - - -
13 Hb_001999_120 0.0993215532 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
14 Hb_000313_380 0.1018121965 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000089_130 0.1042573929 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
16 Hb_000032_220 0.104477369 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
17 Hb_002025_320 0.1049583165 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
18 Hb_000072_280 0.1051554856 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
19 Hb_000787_070 0.1064836834 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
20 Hb_012522_030 0.1066522367 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_025087_010 Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_025087_010--Hb_183963_020 Hb_001366_230 Hb_001366_230 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_183963_020--Hb_001722_040 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_001981_090 Hb_001981_090 Hb_008695_190--Hb_001981_090 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_009026_050--Hb_001366_230 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_009026_050--Hb_183963_020 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_015934_020 Hb_015934_020 Hb_005000_290--Hb_015934_020 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_000329_600 Hb_000329_600 Hb_005000_290--Hb_000329_600 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.999 37.1522 11.2111 21.2197 192.396 195.589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
366.244 302.436 266.032 49.6617 11.1398

CAGE analysis