Hb_001999_120

Information

Type -
Description -
Location Contig1999: 143625-144830
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04910g
description POPTRDRAFT_650148; Pleckstrin homology domain-containing protein 1
nr
ID XP_012067805.1
description PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9ST43
description Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2
trembl
ID A0A067LDM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08484 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_I20.ab1: 144241-144903 , 052_M15.ab1: 144337-144880 , 053_P04.ab1: 144225-144850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_120 0.0 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
2 Hb_003038_180 0.0770100924 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
3 Hb_001722_040 0.0925380632 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
4 Hb_000062_580 0.0969998482 - - ATP binding protein, putative [Ricinus communis]
5 Hb_025087_010 0.0993215532 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
6 Hb_005618_040 0.1116287776 - - -
7 Hb_000926_290 0.1124411356 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008695_190 0.1127834789 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
9 Hb_000008_320 0.1131813361 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
10 Hb_183963_020 0.1131871645 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
11 Hb_002235_400 0.1147799169 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
12 Hb_048141_010 0.11579902 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
13 Hb_003050_230 0.1162922569 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002447_030 0.1174974297 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
15 Hb_000479_180 0.1200147177 - - conserved hypothetical protein [Ricinus communis]
16 Hb_025246_010 0.1211535606 - - -
17 Hb_003226_150 0.121162647 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
18 Hb_008847_010 0.1222499022 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_003540_230 0.1243868164 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
20 Hb_007021_020 0.1247427307 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_120 Hb_001999_120 Hb_003038_180 Hb_003038_180 Hb_001999_120--Hb_003038_180 Hb_001722_040 Hb_001722_040 Hb_001999_120--Hb_001722_040 Hb_000062_580 Hb_000062_580 Hb_001999_120--Hb_000062_580 Hb_025087_010 Hb_025087_010 Hb_001999_120--Hb_025087_010 Hb_005618_040 Hb_005618_040 Hb_001999_120--Hb_005618_040 Hb_000926_290 Hb_000926_290 Hb_001999_120--Hb_000926_290 Hb_003038_180--Hb_000062_580 Hb_003038_180--Hb_001722_040 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_001722_040--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_000526_020 Hb_000526_020 Hb_000062_580--Hb_000526_020 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_000062_580--Hb_001722_040 Hb_025087_010--Hb_183963_020 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_005618_040--Hb_025087_010 Hb_001153_200 Hb_001153_200 Hb_005618_040--Hb_001153_200 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270 Hb_003226_150 Hb_003226_150 Hb_000926_290--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000926_290--Hb_002529_100 Hb_000926_290--Hb_003581_090 Hb_000008_320 Hb_000008_320 Hb_000926_290--Hb_000008_320 Hb_000926_290--Hb_008695_190 Hb_000521_150 Hb_000521_150 Hb_000926_290--Hb_000521_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
292.566 56.4875 12.2155 36.6599 167.783 257.379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
625.222 352.353 249.678 67.1129 16.1124

CAGE analysis