Hb_000062_580

Information

Type -
Description -
Location Contig62: 392646-394492
Sequence    

Annotation

kegg
ID rcu:RCOM_1080880
description ATP binding protein, putative
nr
ID XP_002514945.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9RMH6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1080880 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51483: 393065-393584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_580 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_003038_180 0.0714327773 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
3 Hb_000526_020 0.0933346792 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_001999_120 0.0969998482 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
5 Hb_007021_020 0.1021401337 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
6 Hb_003581_090 0.1043364171 - - PREDICTED: galactose oxidase [Jatropha curcas]
7 Hb_001722_040 0.1087191696 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
8 Hb_000005_030 0.1138560323 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
9 Hb_000580_170 0.1139505168 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_183963_020 0.1142013066 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
11 Hb_000926_290 0.1143962802 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012799_060 0.1186489701 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_007120_070 0.1219506457 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
14 Hb_030765_020 0.1234176561 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000143_050 0.123591384 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
16 Hb_002759_230 0.1236460778 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
17 Hb_000487_310 0.1240851225 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
18 Hb_001711_030 0.1245011773 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
19 Hb_001153_080 0.1246971758 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
20 Hb_002660_160 0.1248789947 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000062_580 Hb_000062_580 Hb_003038_180 Hb_003038_180 Hb_000062_580--Hb_003038_180 Hb_000526_020 Hb_000526_020 Hb_000062_580--Hb_000526_020 Hb_001999_120 Hb_001999_120 Hb_000062_580--Hb_001999_120 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_001722_040 Hb_001722_040 Hb_000062_580--Hb_001722_040 Hb_003038_180--Hb_001999_120 Hb_003038_180--Hb_001722_040 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_001266_050 Hb_001266_050 Hb_000526_020--Hb_001266_050 Hb_000052_010 Hb_000052_010 Hb_000526_020--Hb_000052_010 Hb_000005_030 Hb_000005_030 Hb_000526_020--Hb_000005_030 Hb_000526_020--Hb_003038_180 Hb_000184_180 Hb_000184_180 Hb_000526_020--Hb_000184_180 Hb_001999_120--Hb_001722_040 Hb_025087_010 Hb_025087_010 Hb_001999_120--Hb_025087_010 Hb_005618_040 Hb_005618_040 Hb_001999_120--Hb_005618_040 Hb_000926_290 Hb_000926_290 Hb_001999_120--Hb_000926_290 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_092706_020 Hb_092706_020 Hb_003581_090--Hb_092706_020 Hb_002291_030 Hb_002291_030 Hb_003581_090--Hb_002291_030 Hb_002759_230 Hb_002759_230 Hb_003581_090--Hb_002759_230 Hb_002529_100 Hb_002529_100 Hb_003581_090--Hb_002529_100 Hb_003581_090--Hb_000926_290 Hb_003581_090--Hb_001722_040 Hb_001722_040--Hb_183963_020 Hb_001722_040--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80112 1.01543 0.214264 1.04295 2.8529 4.57335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0607 11.0062 6.53639 0.928909 0.718409

CAGE analysis