Hb_000526_020

Information

Type -
Description -
Location Contig526: 26782-28486
Sequence    

Annotation

kegg
ID rcu:RCOM_1526930
description electron transporter, putative
nr
ID ADR70871.1
description thioredoxin-like family protein [Hevea brasiliensis]
swissprot
ID Q9FMN4
description Thioredoxin-like protein Clot OS=Arabidopsis thaliana GN=At5g42850 PE=2 SV=1
trembl
ID V5IV10
description Thioredoxin-like family protein OS=Hevea brasiliensis GN=Trxl2 PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like protein clot

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46985: 26777-28449
cDNA
(Sanger)
(ID:Location)		 011_G22.ab1: 26779-28368 , 042_H22.ab1: 28076-28415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000526_020 0.0 - - thioredoxin-like family protein [Hevea brasiliensis]
2 Hb_000062_580 0.0933346792 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001266_050 0.1008567999 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
4 Hb_000052_010 0.1017541951 - - hypothetical protein M569_08416, partial [Genlisea aurea]
5 Hb_000005_030 0.1027446503 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
6 Hb_003038_180 0.1102936311 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
7 Hb_000184_180 0.112478985 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
8 Hb_150299_030 0.117802169 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001153_080 0.1178690235 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
10 Hb_149683_010 0.1191832323 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
11 Hb_001722_040 0.1219326232 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
12 Hb_000161_050 0.1225803007 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010166_020 0.1239067427 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
14 Hb_006816_440 0.124530537 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_002781_020 0.1264042726 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
16 Hb_001252_140 0.1275101747 - - catalytic, putative [Ricinus communis]
17 Hb_001999_120 0.1277566197 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
18 Hb_002447_030 0.1280564407 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
19 Hb_004410_010 0.1331525748 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
20 Hb_007747_130 0.1354485288 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]

Gene co-expression network

sample Hb_000526_020 Hb_000526_020 Hb_000062_580 Hb_000062_580 Hb_000526_020--Hb_000062_580 Hb_001266_050 Hb_001266_050 Hb_000526_020--Hb_001266_050 Hb_000052_010 Hb_000052_010 Hb_000526_020--Hb_000052_010 Hb_000005_030 Hb_000005_030 Hb_000526_020--Hb_000005_030 Hb_003038_180 Hb_003038_180 Hb_000526_020--Hb_003038_180 Hb_000184_180 Hb_000184_180 Hb_000526_020--Hb_000184_180 Hb_000062_580--Hb_003038_180 Hb_001999_120 Hb_001999_120 Hb_000062_580--Hb_001999_120 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_001722_040 Hb_001722_040 Hb_000062_580--Hb_001722_040 Hb_010166_020 Hb_010166_020 Hb_001266_050--Hb_010166_020 Hb_001198_030 Hb_001198_030 Hb_001266_050--Hb_001198_030 Hb_001266_050--Hb_000052_010 Hb_004410_010 Hb_004410_010 Hb_001266_050--Hb_004410_010 Hb_001266_050--Hb_000184_180 Hb_000052_010--Hb_000184_180 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_004055_060 Hb_004055_060 Hb_000052_010--Hb_004055_060 Hb_000005_030--Hb_006816_440 Hb_000005_030--Hb_003038_180 Hb_000005_030--Hb_000062_580 Hb_000005_030--Hb_149683_010 Hb_000005_030--Hb_000184_180 Hb_003038_180--Hb_001999_120 Hb_003038_180--Hb_001722_040 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_000184_180--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
508.1 30.9809 27.2894 104.67 253.029 353.415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1194.3 980.105 369.409 57.773 27.8844

CAGE analysis