Hb_007747_130

Information

Type -
Description -
Location Contig7747: 104697-105379
Sequence    

Annotation

kegg
ID egr:104447378
description uncharacterized LOC104447378
nr
ID XP_012074398.1
description PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08826 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57745: 104518-107133
cDNA
(Sanger)
(ID:Location)		 008_P24.ab1: 104494-107065

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_130 0.0 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
2 Hb_004410_010 0.0986742928 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
3 Hb_000184_180 0.1028435829 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
4 Hb_115919_020 0.1065100167 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
5 Hb_001252_140 0.1065794316 - - catalytic, putative [Ricinus communis]
6 Hb_006469_060 0.1153903374 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
7 Hb_001621_180 0.1200953689 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
8 Hb_092272_020 0.1214663342 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
9 Hb_000284_010 0.1238134203 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
10 Hb_008408_030 0.1297948359 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
11 Hb_017711_010 0.1334932032 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
12 Hb_000563_590 0.1337098824 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
13 Hb_000032_260 0.1338030612 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
14 Hb_001104_120 0.1348261468 - - -
15 Hb_000078_030 0.1348819421 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000526_020 0.1354485288 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_000143_050 0.1361765969 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
18 Hb_000787_070 0.1384567994 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
19 Hb_012305_060 0.1394904258 - - protein translocase, putative [Ricinus communis]
20 Hb_000085_200 0.1396358856 - - ATP synthase subunit H protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_007747_130 Hb_007747_130 Hb_004410_010 Hb_004410_010 Hb_007747_130--Hb_004410_010 Hb_000184_180 Hb_000184_180 Hb_007747_130--Hb_000184_180 Hb_115919_020 Hb_115919_020 Hb_007747_130--Hb_115919_020 Hb_001252_140 Hb_001252_140 Hb_007747_130--Hb_001252_140 Hb_006469_060 Hb_006469_060 Hb_007747_130--Hb_006469_060 Hb_001621_180 Hb_001621_180 Hb_007747_130--Hb_001621_180 Hb_004410_010--Hb_001252_140 Hb_002660_160 Hb_002660_160 Hb_004410_010--Hb_002660_160 Hb_001104_120 Hb_001104_120 Hb_004410_010--Hb_001104_120 Hb_116264_010 Hb_116264_010 Hb_004410_010--Hb_116264_010 Hb_000787_070 Hb_000787_070 Hb_004410_010--Hb_000787_070 Hb_006816_440 Hb_006816_440 Hb_000184_180--Hb_006816_440 Hb_000052_010 Hb_000052_010 Hb_000184_180--Hb_000052_010 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_000184_180--Hb_115919_020 Hb_000284_010 Hb_000284_010 Hb_115919_020--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_115919_020--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_115919_020--Hb_000078_030 Hb_115919_020--Hb_000787_070 Hb_000193_230 Hb_000193_230 Hb_115919_020--Hb_000193_230 Hb_002298_040 Hb_002298_040 Hb_115919_020--Hb_002298_040 Hb_001252_140--Hb_001621_180 Hb_001252_140--Hb_006469_060 Hb_001252_140--Hb_001104_120 Hb_034585_040 Hb_034585_040 Hb_001252_140--Hb_034585_040 Hb_000580_160 Hb_000580_160 Hb_006469_060--Hb_000580_160 Hb_005615_070 Hb_005615_070 Hb_006469_060--Hb_005615_070 Hb_006469_060--Hb_001621_180 Hb_012779_110 Hb_012779_110 Hb_006469_060--Hb_012779_110 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
697.024 17.4638 6.07063 119.037 338.763 778.445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1022.74 1325.37 532.381 80.7776 5.55623

CAGE analysis